TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000114_1.0 # Protein # Selenoprotein N (SelN) # Mus
musculus # Complete
         (557 letters)

Database: C.parvum/genome.fa 
           8 sequences; 9,102,324 total letters

Searching........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000432.1| Cryptosporidium parvum Iowa II chromosome 4, whol...    28   7.0  
gb|CM000429.1| Cryptosporidium parvum Iowa II chromosome 1, whol...    28   7.0  

>gb|CM000432.1| Cryptosporidium parvum Iowa II chromosome 4, whole genome shotgun
              sequence
          Length = 1104417

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +1

Query: 61     QESALKVLGTDGLFLFSSLDTDQD 84
              +ES +K+ G   LFLF  +DT+QD
Sbjct: 302065 KESLIKLSGFTDLFLFIQVDTEQD 302136



 Score = 27.7 bits (60), Expect = 7.0
 Identities = 14/23 (60%), Positives = 17/23 (73%)
 Frame = -3

Query: 30     LALLGALLAAAAAVAAARACALL 52
              + LL AL AAAAA AAA+A  L+
Sbjct: 398092 IVLLAALFAAAAAAAAAKASLLI 398024



 Score = 27.3 bits (59), Expect = 9.2
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +3

Query: 18     AQPAPPRRRARALALLG--ALLAAAAAVAAARACA 50
              A P PP++R R    +   AL AAAAA AA  A +
Sbjct: 397980 APPEPPKKRGRGRPRINREALAAAAAAAAANNAAS 398084


>gb|CM000429.1| Cryptosporidium parvum Iowa II chromosome 1, whole genome shotgun
              sequence
          Length = 875659

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = +1

Query: 509    FLDITSMKPEDMENNNVFSFSSSFEDPS 536
              FL++  +   ++E ++VFS  +SF++PS
Sbjct: 849712 FLELALLDDSNIEESDVFSIGASFKEPS 849795


  Database: C.parvum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 9,102,324
  Number of sequences in database:  8
  
Lambda     K      H
   0.320    0.135    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,106,360
Number of Sequences: 8
Number of extensions: 76875
Number of successful extensions: 339
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 309
Number of HSP's gapped (non-prelim): 63
length of query: 557
length of database: 3,034,108
effective HSP length: 97
effective length of query: 460
effective length of database: 3,033,332
effective search space: 1395332720
effective search space used: 1395332720
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)