TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000114_1.0 # Protein # Selenoprotein N (SelN) # Mus
musculus # Complete
         (557 letters)

Database: C.muris/genome.fa 
           84 sequences; 9,245,251 total letters

Searching...................................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|DS989768.1| Cryptosporidium muris RN66 scf_1106632373447 geno...    30   1.4  
gb|DS989735.1| Cryptosporidium muris RN66 scf_1106632353989 geno...    28   7.1  

>gb|DS989768.1| Cryptosporidium muris RN66 scf_1106632373447 genomic scaffold,
           whole genome shotgun sequence
          Length = 1421

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 29/87 (33%), Positives = 36/87 (41%), Gaps = 16/87 (18%)
 Frame = +1

Query: 2   GQARPAARRPHSPDPGAQPAPPRRRARALALLGALLA------AAAAVAAARACALLAD- 54
           G AR  ARR   P    +P P R R +    LG L+A      A A   A+  CA LA  
Sbjct: 181 GAARRRARRASRPAVALRPRPRRCRTQRERHLGKLVARQDRRRARARTVASGRCARLAAG 360

Query: 55  ---------AQAAARQESALKVLGTDG 72
                     +A+AR  S   V+  DG
Sbjct: 361 PEDRLLRRVGRASARDLSWHAVVSKDG 441


>gb|DS989735.1| Cryptosporidium muris RN66 scf_1106632353989 genomic scaffold, whole
              genome shotgun sequence
          Length = 378465

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 2/116 (1%)
 Frame = +1

Query: 410    KKLVHSILLWGALDDQSCUGSGRTLRETVLESPPILTLLNESFISTWSLVKELEDLQTQQ 469
              KKL    LL+  +D+ +       ++   L+SP +LT+  ++FI  +  +KEL       
Sbjct: 306595 KKLKVDPLLYNKIDNITL------IKNNSLDSP-LLTIYQDNFIKIYGQIKELILYNLIN 306753

Query: 470    ENPLHRQLAGLHLEKYSFPVEMMICLPNGTVVHH--INANYFLDITSMKPEDMENN 523
              +N     L  +    +S  +  M     GT++     N  +F+ I S+K + M N+
Sbjct: 306754 QNENFSTLDTVSKWLWSDSIGFMY---TGTILESDISNKEFFVKIYSVKIDIMNNS 306912


  Database: C.muris/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 9,245,251
  Number of sequences in database:  84
  
Lambda     K      H
   0.320    0.135    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,863,400
Number of Sequences: 84
Number of extensions: 69203
Number of successful extensions: 258
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 239
Number of HSP's gapped (non-prelim): 71
length of query: 557
length of database: 3,081,750
effective HSP length: 97
effective length of query: 460
effective length of database: 3,073,602
effective search space: 1413856920
effective search space used: 1413856920
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)