TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000114_1.0 # Protein # Selenoprotein N (SelN) # Mus musculus # Complete (557 letters) Database: C.merolae/genome.fa 20 sequences; 16,546,747 total letters Searching....................done Score E Sequences producing significant alignments: (bits) Value dbj|AP006487.2| Cyanidioschyzon merolae DNA, chromosome 5, compl... 33 0.39 dbj|AP006489.2| Cyanidioschyzon merolae DNA, chromosome 7, compl... 32 0.67 dbj|AP006488.2| Cyanidioschyzon merolae DNA, chromosome 6, compl... 32 0.87 dbj|AP006493.2| Cyanidioschyzon merolae DNA, chromosome 11, comp... 32 0.87 dbj|AP006498.2| Cyanidioschyzon merolae DNA, chromosome 16, comp... 31 1.1 dbj|AP006483.2| Cyanidioschyzon merolae DNA, chromosome 1, compl... 30 1.9 dbj|AP006492.2| Cyanidioschyzon merolae DNA, chromosome 10, comp... 30 1.9 dbj|AP006496.2| Cyanidioschyzon merolae DNA, chromosome 14, comp... 30 1.9 dbj|AP006502.2| Cyanidioschyzon merolae DNA, chromosome 20, comp... 30 1.9 dbj|AP006494.2| Cyanidioschyzon merolae DNA, chromosome 12, comp... 30 3.3 dbj|AP006501.2| Cyanidioschyzon merolae DNA, chromosome 19, comp... 30 3.3 dbj|AP006491.2| Cyanidioschyzon merolae DNA, chromosome 9, compl... 29 4.3 dbj|AP006497.2| Cyanidioschyzon merolae DNA, chromosome 15, comp... 29 4.3 dbj|AP006495.2| Cyanidioschyzon merolae DNA, chromosome 13, comp... 29 5.7 dbj|AP006499.2| Cyanidioschyzon merolae DNA, chromosome 17, comp... 28 7.4 dbj|AP006500.2| Cyanidioschyzon merolae DNA, chromosome 18, comp... 28 9.7 >dbj|AP006487.2| Cyanidioschyzon merolae DNA, chromosome 5, complete genome, complete sequence Length = 528682 Score = 32.7 bits (73), Expect = 0.39 Identities = 31/80 (38%), Positives = 33/80 (41%), Gaps = 23/80 (28%) Frame = +1 Query: 2 GQARPAAR-----RPHSPDPGAQPAPPRRRARALALLGALL------------------A 38 GQ RP R R S PGA APPRRR A A + A Sbjct: 291427 GQLRPRGRPLSHTRAPSHSPGAAKAPPRRRPGAQKSYNAPVGETPEAPAMHRGNRVPPAA 291606 Query: 39 AAAAVAAARACALLADAQAA 58 AAAA AAA AL+ A AA Sbjct: 291607 AAAAAAAALVHALVLPAIAA 291666 Score = 29.6 bits (65), Expect = 3.3 Identities = 27/87 (31%), Positives = 37/87 (42%) Frame = +1 Query: 16 PGAQPAPPRRRARALALLGALLAAAAAVAAARACALLADAQAAARQESALKVLGTDGLFL 75 P + + RRAR A AAA A AAA A + +AA +E L L+L Sbjct: 74539 PASNSSGAGRRARGTGGAAAAAAAATATAAAAAESSRFTKSSAATKEDTL-------LWL 74697 Query: 76 FSSLDTDQDMYISPEEFKPIAEKLTGS 102 S + D+D E I+ + GS Sbjct: 74698 NSDDEDDEDEAFEKERSSAISGQGRGS 74778 Score = 29.6 bits (65), Expect = 3.3 Identities = 24/57 (42%), Positives = 26/57 (45%) Frame = +1 Query: 17 GAQPAPPRRRARALALLGALLAAAAAVAAARACALLADAQAAARQESALKVLGTDGL 73 GA P R RA A A +AAAA AAA A AL +A SA V GL Sbjct: 241876 GAFLDPVRARAAAAVSASASSSAAAAAAAAAAAALPRSLGSAGTGTSAGGVSAPTGL 242046 Score = 28.1 bits (61), Expect = 9.7 Identities = 27/92 (29%), Positives = 35/92 (38%), Gaps = 9/92 (9%) Frame = -3 Query: 20 PAPPRRRARALALLGALLAAAAAVAAARACALLADAQAAARQESALKVLGTDGLFLFSSL 79 PA P R G+ AAAAA AAA LA AAAR + + + S+L Sbjct: 242003 PADPNER-------GSAAAAAAAAAAAAELEALALTAAAARARTGSRKAPSAACVAASNL 241845 Query: 80 DTDQDMYISP---------EEFKPIAEKLTGS 102 T E F+P E +G+ Sbjct: 241844 STIMGTQAKASLISR*SRFESFRPALESASGN 241749 >dbj|AP006489.2| Cyanidioschyzon merolae DNA, chromosome 7, complete genome, complete sequence Length = 584452 Score = 32.0 bits (71), Expect = 0.67 Identities = 34/124 (27%), Positives = 57/124 (45%) Frame = +1 Query: 35 ALLAAAAAVAAARACALLADAQAAARQESALKVLGTDGLFLFSSLDTDQDMYISPEEFKP 94 A AAAAA AA + LLA+ E V+ T G+ SS+ + + Sbjct: 464236 AAAAAAAASAATESIQLLAET------EDMRSVMNTQGIDA-SSVYCNHVL--------- 464367 Query: 95 IAEKLTGSVPVANYEEEELPHDPSEETLTIEARFQPLLMETMTKSKDGFLGVSRLALSGL 154 + E++ G + +E+ + +T++AR LL + MT+S LG++R +S + Sbjct: 464368 VVEQVLGIEAARSTIVKEVLETMAAHGVTLDARHVDLLSDMMTQSGQ-VLGITRFGISKM 464544 Query: 155 RNWT 158 R T Sbjct: 464545 RQST 464556 Score = 29.3 bits (64), Expect = 4.3 Identities = 19/45 (42%), Positives = 24/45 (53%) Frame = -3 Query: 11 PHSPDPGAQPAPPRRRARALALLGALLAAAAAVAAARACALLADA 55 P G +PAP R + RA+ L GAL A A+A + ALL A Sbjct: 221054 PRYSGMGVKPAPVRSQERAIHLQGAL---ARAIARSATEALLVSA 220929 Score = 28.5 bits (62), Expect = 7.4 Identities = 23/38 (60%), Positives = 24/38 (63%), Gaps = 2/38 (5%) Frame = -1 Query: 24 RRRARAL--ALLGALLAAAAAVAAARACALLADAQAAA 59 RRRAR L A LG LL AAAA AAA + L DA AA Sbjct: 558142 RRRARHLLVASLGRLLRAAAAAAAAVSSHL--DASLAA 558035 >dbj|AP006488.2| Cyanidioschyzon merolae DNA, chromosome 6, complete genome, complete sequence Length = 536163 Score = 31.6 bits (70), Expect = 0.87 Identities = 26/76 (34%), Positives = 33/76 (43%), Gaps = 7/76 (9%) Frame = -1 Query: 3 QARPAARRPHSPDPGAQPAPPR-------RRARALALLGALLAAAAAVAAARACALLADA 55 ++R R D G PA R R++ L A AAAAA AAA A A Sbjct: 135345 RSRRRLRAARELDCGGSPASASAGVVESARGLRSIPLDAAAAAAAAAAAAAAAFPRAPSA 135166 Query: 56 QAAARQESALKVLGTD 71 A +R ++AL TD Sbjct: 135165 SAVSRCKAALSAAQTD 135118 >dbj|AP006493.2| Cyanidioschyzon merolae DNA, chromosome 11, complete genome, complete sequence Length = 852849 Score = 31.6 bits (70), Expect = 0.87 Identities = 22/65 (33%), Positives = 35/65 (53%) Frame = -2 Query: 3 QARPAARRPHSPDPGAQPAPPRRRARALALLGALLAAAAAVAAARACALLADAQAAARQE 62 ++R A+R+ P GAQ +PP RR + GA L A + +A A A A+ +++ Q Sbjct: 440201 RSRRASRKV--PGRGAQKSPPDRRCCSADQQGAALKAPSCLAVALAMAIPTANRSSDMQR 440028 Query: 63 SALKV 67 S+ V Sbjct: 440027 SSHSV 440013 Score = 30.4 bits (67), Expect = 1.9 Identities = 19/62 (30%), Positives = 30/62 (48%) Frame = +1 Query: 225 FHPRPFVKTRFAPQGTVACLTAISDSYYTVMFRIHAEFQLSEPPDFPFWFSPGQFTGHII 284 F PR V R + V L+ +DSY + +R+HA + L W P F G++I Sbjct: 426343 FVPRTVVHVR--RRNLVTDLSPQTDSYLEITYRVHAFYAL--------WLKPLIFVGYLI 426492 Query: 285 LS 286 ++ Sbjct: 426493 IA 426498 >dbj|AP006498.2| Cyanidioschyzon merolae DNA, chromosome 16, complete genome, complete sequence Length = 908485 Score = 31.2 bits (69), Expect = 1.1 Identities = 27/83 (32%), Positives = 35/83 (42%), Gaps = 5/83 (6%) Frame = -1 Query: 6 PAARRPHSPDPGAQPAPPRRRARALALLGALLAAAAAVAAARAC-----ALLADAQAAAR 60 P +RP PD R A A+ + G++ A +A C ALL A+ Sbjct: 99637 PVVQRP-CPDHRRPAVAAARSAVAIRVCGSVTATGMVLAFRLTCLRSSEALLIRARCELS 99461 Query: 61 QESALKVLGTDGLFLFSSLDTDQ 83 + AL V D L LF S TDQ Sbjct: 99460 GKPALPVHDLDSL*LFQSGTTDQ 99392 >dbj|AP006483.2| Cyanidioschyzon merolae DNA, chromosome 1, complete genome, complete sequence Length = 422616 Score = 30.4 bits (67), Expect = 1.9 Identities = 18/35 (51%), Positives = 20/35 (57%) Frame = +2 Query: 17 GAQPAPPRRRARALALLGALLAAAAAVAAARACAL 51 GA P P +R +A GAL AAA AA R CAL Sbjct: 83702 GAAPVPAQR----VAYTGALRPFAAAAAACRGCAL 83794 Score = 29.3 bits (64), Expect = 4.3 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = -1 Query: 11 PHSPDPGAQPAPPRRRARALALLGALLAAAAAVAAA 46 PHS GAQ PPR +RA + G+ + +AA +A Sbjct: 411327 PHSCTAGAQTRPPRTSSRAGSSTGSTQSRSAACRSA 411220 Score = 29.3 bits (64), Expect = 4.3 Identities = 22/47 (46%), Positives = 26/47 (55%) Frame = -3 Query: 34 GALLAAAAAVAAARACALLADAQAAARQESALKVLGTDGLFLFSSLD 80 GA AAAAA AAA A ++A A AAA AL + G L +LD Sbjct: 56863 GAAAAAAAAAAAAAAVVVVATA-AAAAVAVAL*LQGASAAALLLALD 56726 Score = 28.9 bits (63), Expect = 5.7 Identities = 37/154 (24%), Positives = 56/154 (36%), Gaps = 9/154 (5%) Frame = +2 Query: 27 ARALALLGALLAAAAAVAA---------ARACALLADAQAAARQESALKVLGTDGLFLFS 77 ARAL L A A A A R+ ++L A A ++L T+ L + + Sbjct: 342869 ARALVPLLAYFAGTAVDATDDRLQHELRERSWSILT----ADTSSMAERLLATEALSMLA 343036 Query: 78 SLDTDQDMYISPEEFKPIAEKLTGSVPVANYEEEELPHDPSEETLTIEARFQPLLMETMT 137 D +Y + + + E+ E P P +T EA F +M Sbjct: 343037 IADPSALLYRALDALHELEERALSRC-------SETPEAPRHDTDDAEAAFTVAIM---- 343183 Query: 138 KSKDGFLGVSRLALSGLRNWTTAASPSAAFAARH 171 +D +SRL LR+W + ARH Sbjct: 343184 -LRDRHRALSRLVAQLLRHWHRLSEAPLHLPARH 343282 >dbj|AP006492.2| Cyanidioschyzon merolae DNA, chromosome 10, complete genome, complete sequence Length = 839707 Score = 30.4 bits (67), Expect = 1.9 Identities = 27/60 (45%), Positives = 28/60 (46%), Gaps = 4/60 (6%) Frame = +1 Query: 10 RPHSPDPGAQPAPPRRRARA----LALLGALLAAAAAVAAARACALLADAQAAARQESAL 65 RP+S PGA RA A L AAAAA AAA A A A A AAA AL Sbjct: 378358 RPYSCRPGALHEHNGHRADARPDSSKLFCLCRAAAAAAAAAAAAAAAAAAAAAAAAHLAL 378537 Score = 29.6 bits (65), Expect = 3.3 Identities = 24/56 (42%), Positives = 25/56 (44%) Frame = +1 Query: 26 RARALALLGALLAAAAAVAAARACALLADAQAAARQESALKVLGTDGLFLFSSLDT 81 RA A A A AAAAA AAA A A LA Q A + K L L S T Sbjct: 378451 RAAAAAAAAAAAAAAAAAAAAAAAAHLALLQTLAIGSATEKYLDRSRACLVSHRST 378618 Score = 29.3 bits (64), Expect = 4.3 Identities = 17/35 (48%), Positives = 23/35 (65%) Frame = -3 Query: 35 ALLAAAAAVAAARACALLADAQAAARQESALKVLG 69 A AAAAA AAA A A A A AA ++++ L++ G Sbjct: 378524 AAAAAAAAAAAAAAAAAAAAAAAARQRQNNLELSG 378420 Score = 28.1 bits (61), Expect = 9.7 Identities = 14/23 (60%), Positives = 16/23 (69%), Gaps = 1/23 (4%) Frame = +3 Query: 297 LFVPNHRS-LNVDMEWLYGASET 318 LF NHRS LNV+ +LYG ET Sbjct: 612399 LFASNHRSRLNVESRFLYGHQET 612467 >dbj|AP006496.2| Cyanidioschyzon merolae DNA, chromosome 14, complete genome, complete sequence Length = 852727 Score = 30.4 bits (67), Expect = 1.9 Identities = 20/59 (33%), Positives = 26/59 (44%) Frame = +2 Query: 5 RPAARRPHSPDPGAQPAPPRRRARALALLGALLAAAAAVAAARACALLADAQAAARQES 63 R ARR H DP P P R R G +++ + R+C A A AAA Q + Sbjct: 603380 RSRARRYHPADPPQSPLPRRYR-------GPARPSSSCLQRLRSCQRFARADAAALQSA 603535 Score = 28.9 bits (63), Expect = 5.7 Identities = 18/56 (32%), Positives = 28/56 (50%) Frame = +1 Query: 330 QMELEAVGPSVPSVILDEDGNMIDSRLPSGEPLQFVFEEIKWHQELSWEEAARRLE 385 + +LEA GP + G D R P+ +P ++FE H + S++E R LE Sbjct: 144562 RQDLEAEGPESSATQGQNTGVKWDVRHPAFDPRSYLFEV---HVDTSYQELERGLE 144720 Score = 28.1 bits (61), Expect = 9.7 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 8/62 (12%) Frame = -1 Query: 3 QARPAARRPHSPDPGAQPAPPRRRARA--------LALLGALLAAAAAVAAARACALLAD 54 ++R + RR PG P P +R RA + + AAAAA AA A A+ D Sbjct: 109801 RSRHSKRRRCCGAPGTPPPPSHKRFRAP*VPSTATRIMATTMTAAAAAAAAGTAFAVAVD 109622 Query: 55 AQ 56 + Sbjct: 109621 RE 109616 >dbj|AP006502.2| Cyanidioschyzon merolae DNA, chromosome 20, complete genome, complete sequence Length = 1621617 Score = 30.4 bits (67), Expect = 1.9 Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 4/59 (6%) Frame = +3 Query: 11 PHSPDPGAQPAPPRRRARALALLGALLAAAAAVAAARACALLADAQAA----ARQESAL 65 P + PGA A RR AR A + A A+AAA A A A A AR+++ L Sbjct: 495774 PGAAHPGAPAAASRRGARPAAASRGIAAGETALAAAAAAAATAATAVAVVNVARRDAPL 495950 Score = 30.0 bits (66), Expect = 2.5 Identities = 21/45 (46%), Positives = 22/45 (48%), Gaps = 7/45 (15%) Frame = +1 Query: 16 PGAQPAPPRRR-------ARALALLGALLAAAAAVAAARACALLA 53 PG P PP R A A A G +AAAAA AA R A LA Sbjct: 1482619 PGTAPQPPGREAGLAVDAASATATPGVCVAAAAAAAARRYSADLA 1482753 Score = 28.1 bits (61), Expect = 9.7 Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 9/81 (11%) Frame = +2 Query: 417 LLWGALDDQSCUGSGRTLRETVLESPP---------ILTLLNESFISTWSLVKELEDLQT 467 L++G + + S TL +T L PP + T L+ + +T + L T Sbjct: 320612 LVYGKVKHSNHHCSNTTLTDTPLYMPPEEAASVVEQVRTELSATTENTGDAGMKHGALAT 320791 Query: 468 QQENPLHRQLAGLHLEKYSFP 488 + PLHR+ + LEK+ P Sbjct: 320792 RSLRPLHREASISQLEKFHMP 320854 Score = 28.1 bits (61), Expect = 9.7 Identities = 22/52 (42%), Positives = 25/52 (48%), Gaps = 5/52 (9%) Frame = +2 Query: 4 ARPAARRPHSPDP-GAQPAPPRRRARALALLGALLAAAAAVAA----ARACA 50 AR A R+P P G P PR R+ A A LL AAA + AR CA Sbjct: 471761 ARCAPRQPVGYVPIGGAPGAPRARSAAAAACCCLLLPAAACSCSGGGARRCA 471916 Score = 28.1 bits (61), Expect = 9.7 Identities = 36/137 (26%), Positives = 54/137 (39%) Frame = +2 Query: 45 AARACALLADAQAAARQESALKVLGTDGLFLFSSLDTDQDMYISPEEFKPIAEKLTGSVP 104 A +AC L A+A + E+ K G F+ +S D DQ + + E+ A ++ P Sbjct: 1586036 ARKACRLHDSAEARSLLETLEKSARRTG-FVLNSADHDQAVVGAGEDDAAGAGQVP---P 1586203 Query: 105 VANYEEEELPHDPSEETLTIEARFQPLLMETMTKSKDGFLGVSRLALSGLRNWTTAASPS 164 V ++ P P E+ A + + K + S + AAS Sbjct: 1586204 VNTHDRRGQPSAPVEDAAGAGASGKREA-DAHAKHQPRSNNYVNTGASHSNGHSQAASEE 1586380 Query: 165 AAFAARHFRPFLPPPGQ 181 AA AA H R P P Q Sbjct: 1586381 AASAASHTRTQKPQPAQ 1586431 >dbj|AP006494.2| Cyanidioschyzon merolae DNA, chromosome 12, complete genome, complete sequence Length = 859119 Score = 29.6 bits (65), Expect = 3.3 Identities = 19/39 (48%), Positives = 22/39 (56%) Frame = +2 Query: 16 PGAQPAPPRRRARALALLGALLAAAAAVAAARACALLAD 54 P A A P A A+A A+ AAAAA AAA A A +D Sbjct: 214637 PCAGNALPTAVAAAVAAAAAVAAAAAAAAAAAAAAAASD 214753 Score = 29.6 bits (65), Expect = 3.3 Identities = 16/30 (53%), Positives = 19/30 (63%) Frame = -3 Query: 35 ALLAAAAAVAAARACALLADAQAAARQESA 64 ALLAAAAA AAA A ++ +A AR A Sbjct: 84007 ALLAAAAAAAAAAAAVIVGGIRATARTRDA 83918 Score = 29.3 bits (64), Expect = 4.3 Identities = 23/47 (48%), Positives = 26/47 (55%), Gaps = 4/47 (8%) Frame = +2 Query: 17 GAQPAPPRRRARALALL----GALLAAAAAVAAARACALLADAQAAA 59 G+ P R+R A L A +AAAAAVAAA A A A A AAA Sbjct: 214607 GSTPWTTRKRPCAGNALPTAVAAAVAAAAAVAAAAAAAAAAAAAAAA 214747 Score = 28.5 bits (62), Expect = 7.4 Identities = 27/83 (32%), Positives = 31/83 (37%), Gaps = 19/83 (22%) Frame = -1 Query: 6 PAARRPHSPDPGAQPAPPRRRARALALLGALLAA-------------------AAAVAAA 46 P A S PG Q A R+L A +AA AAA AAA Sbjct: 214905 PGAAATASASPGIQDAVQHGHYRSLCEAQACIAASASPRRTA*DR*TCRLRSDAAAAAAA 214726 Query: 47 RACALLADAQAAARQESALKVLG 69 A A A A AAA +A +G Sbjct: 214725 AAAAAAAAATAAAAATAAATAVG 214657 Score = 28.1 bits (61), Expect = 9.7 Identities = 17/28 (60%), Positives = 17/28 (60%) Frame = -1 Query: 31 ALLGALLAAAAAVAAARACALLADAQAA 58 AL G AAAAA AAA A A A A AA Sbjct: 838179 ALYGGAAAAAAAAAAAAAAAAAAAAAAA 838096 Score = 28.1 bits (61), Expect = 9.7 Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 3/45 (6%) Frame = -1 Query: 24 RRRARALALLGALLAAAAAVAAARACALL---ADAQAAARQESAL 65 RRR R + LLGAL AA A +L DA A +RQ AL Sbjct: 795846 RRRLRRILLLGALRVPAARGRCATEPSLADIRGDASATSRQRLAL 795712 >dbj|AP006501.2| Cyanidioschyzon merolae DNA, chromosome 19, complete genome, complete sequence Length = 1282939 Score = 29.6 bits (65), Expect = 3.3 Identities = 11/34 (32%), Positives = 22/34 (64%) Frame = -2 Query: 1 MGQARPAARRPHSPDPGAQPAPPRRRARALALLG 34 +G+ RP+ + PH+ +P +P+ +RR+ +LG Sbjct: 804597 LGRTRPSKKGPHTTNPRLEPSETQRRSGYCFVLG 804496 Score = 28.5 bits (62), Expect = 7.4 Identities = 16/36 (44%), Positives = 19/36 (52%) Frame = +3 Query: 9 RRPHSPDPGAQPAPPRRRARALALLGALLAAAAAVA 44 R HSP G QP R + A+ G + AAAAVA Sbjct: 75207 RESHSPVHGKQPVADIIRMVSAAVAGGVATAAAAVA 75314 Score = 28.1 bits (61), Expect = 9.7 Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 6/55 (10%) Frame = -3 Query: 15 DPGAQPAPPRRRAR------ALALLGALLAAAAAVAAARACALLADAQAAARQES 63 DP + P R RAR A + GA AAAAA A AC + ++ AAA+ S Sbjct: 459170 DPTSSPGNWRLRARHSMEGFAASAAGACTAAAAA-RAFSACVVPRESPAAAKSSS 459009 >dbj|AP006491.2| Cyanidioschyzon merolae DNA, chromosome 9, complete genome, complete sequence Length = 810151 Score = 29.3 bits (64), Expect = 4.3 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 1/51 (1%) Frame = -1 Query: 15 DPGAQPAPPRRRARALALLG-ALLAAAAAVAAARACALLADAQAAARQESA 64 DP PA A LG A AAA + AC +L A A+ R+E++ Sbjct: 798043 DPAIYPADIESAVEASVGLGCAATAAAVVIRREHACTMLPQATASQRKETS 797891 Score = 29.3 bits (64), Expect = 4.3 Identities = 22/44 (50%), Positives = 25/44 (56%), Gaps = 2/44 (4%) Frame = -3 Query: 18 AQPAPPRRRARALALLGALLAAAAAVA--AARACALLADAQAAA 59 AQPA R A+ LA+ A AAAAA A A AL +A AAA Sbjct: 469781 AQPAGAMRAAKPLAMRVATAAAAAAAADEGAAGEALTPEALAAA 469650 Score = 28.5 bits (62), Expect = 7.4 Identities = 20/47 (42%), Positives = 24/47 (51%) Frame = -2 Query: 27 ARALALLGALLAAAAAVAAARACALLADAQAAARQESALKVLGTDGL 73 A AL GA AAAAA AA CA+ A AA+R L +D + Sbjct: 81441 AEALRCTGA--AAAAAAAAVVVCAVDDTAGAASRTSRPLHAASSDAI 81307 >dbj|AP006497.2| Cyanidioschyzon merolae DNA, chromosome 15, complete genome, complete sequence Length = 902900 Score = 29.3 bits (64), Expect = 4.3 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 3/55 (5%) Frame = -3 Query: 234 RFAPQGTVACLTAISDSYYTVMF---RIHAEFQLSEPPDFPFWFSPGQFTGHIIL 285 RF G A A+ D +V F FQ+ P FW P QF+G +++ Sbjct: 403452 RFLVSGVGAYGGAVEDLIESVAFINPSFDTSFQVLRFPTVAFWCQPSQFSGSLLI 403288 Score = 28.9 bits (63), Expect = 5.7 Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 5/42 (11%) Frame = +2 Query: 30 LALLGALLAAAAAVAAARACALLADAQ-----AAARQESALK 66 + L+ +L + AAA AAA A A+ A+A A RQES K Sbjct: 285170 IGLIASLCSEAAAAAAAAAAAVAAEASFRCQLARTRQESTTK 285295 >dbj|AP006495.2| Cyanidioschyzon merolae DNA, chromosome 13, complete genome, complete sequence Length = 866983 Score = 28.9 bits (63), Expect = 5.7 Identities = 25/60 (41%), Positives = 27/60 (45%), Gaps = 8/60 (13%) Frame = -1 Query: 2 GQARPAARR--------PHSPDPGAQPAPPRRRARALALLGALLAAAAAVAAARACALLA 53 G AR RR P +PD PA A A A A AAAAA AAAR+ L A Sbjct: 169501 GVARRMCRRCPRVCGTLPPAPDDPGVPA-----AAAAAAAAAAAAAAAAAAAARSARLRA 169337 Score = 28.5 bits (62), Expect = 7.4 Identities = 17/28 (60%), Positives = 18/28 (64%) Frame = +3 Query: 26 RARALALLGALLAAAAAVAAARACALLA 53 RAR+ AL A AAAAA AAA A A A Sbjct: 169335 RARSRALRAAAAAAAAAAAAAAAAAAAA 169418 Score = 28.5 bits (62), Expect = 7.4 Identities = 17/38 (44%), Positives = 20/38 (52%) Frame = -1 Query: 9 RRPHSPDPGAQPAPPRRRARALALLGALLAAAAAVAAA 46 R + A+P P R A+A A A AAAAA AAA Sbjct: 389788 READAATSAARPIAPVRFAKAYATAAAAAAAAAAAAAA 389675 Score = 28.1 bits (61), Expect = 9.7 Identities = 16/27 (59%), Positives = 17/27 (62%) Frame = +3 Query: 24 RRRARALALLGALLAAAAAVAAARACA 50 R R+RAL A AAAAA AAA A A Sbjct: 169335 RARSRALRAAAAAAAAAAAAAAAAAAA 169415 >dbj|AP006499.2| Cyanidioschyzon merolae DNA, chromosome 17, complete genome, complete sequence Length = 1232258 Score = 28.5 bits (62), Expect = 7.4 Identities = 16/45 (35%), Positives = 22/45 (48%) Frame = +2 Query: 3 QARPAARRPHSPDPGAQPAPPRRRARALALLGALLAAAAAVAAAR 47 Q RPA R H+ DP + A + ALL + + + A A AR Sbjct: 1094183 QQRPARSRRHADDPSSSGAERNAVCQHRALLHTIRSQSRAAAVAR 1094317 >dbj|AP006500.2| Cyanidioschyzon merolae DNA, chromosome 18, complete genome, complete sequence Length = 1253087 Score = 28.1 bits (61), Expect = 9.7 Identities = 22/76 (28%), Positives = 29/76 (38%), Gaps = 4/76 (5%) Frame = -1 Query: 1 MGQARPAARRPHSPDPGAQPAPPRRRARALALL----GALLAAAAAVAAARACALLADAQ 56 +G A AR P DP + P ++L G A VAAAR CA DA Sbjct: 878198 VGSALSGARAPTDTDPDQRYRPSTPAELKPSVLEPRHGRAARRAPVVAAARTCAERRDAS 878019 Query: 57 AAARQESALKVLGTDG 72 A ++ + G Sbjct: 878018 VLAANKAPHRASAAPG 877971 Database: C.merolae/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 16,546,747 Number of sequences in database: 20 Lambda K H 0.320 0.135 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 12,442,706 Number of Sequences: 20 Number of extensions: 232793 Number of successful extensions: 2669 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 20 Number of HSP's that attempted gapping in prelim test: 1715 Number of HSP's gapped (non-prelim): 1825 length of query: 557 length of database: 5,515,582 effective HSP length: 101 effective length of query: 456 effective length of database: 5,513,562 effective search space: 2514184272 effective search space used: 2514184272 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 61 (28.1 bits)