TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000018_1.0 # Protein # Selenoprotein N (SelN) # Homo sapiens # Complete (590 letters) Database: P.ultimum/genome.fa 82 sequences; 42,801,618 total letters Searching.................................................................................done Score E Sequences producing significant alignments: (bits) Value gb|GL376622.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 35 0.28 gb|GL376604.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 35 0.28 gb|GL376602.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 34 0.37 gb|GL376627.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 34 0.48 gb|GL376624.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 33 0.63 gb|GL376570.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 33 0.63 gb|GL376626.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 33 0.82 gb|GL376603.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 33 0.82 gb|GL376592.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 33 0.82 gb|GL376620.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 33 1.1 gb|GL376590.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 33 1.1 gb|GL376605.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 32 1.4 gb|GL376577.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 32 1.4 gb|GL376567.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 32 2.4 gb|GL376565.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 32 2.4 gb|GL376636.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 31 3.1 gb|GL376597.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 31 3.1 gb|GL376585.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 31 3.1 gb|GL376573.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 31 3.1 gb|GL376631.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 31 4.1 gb|GL376608.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 31 4.1 gb|GL376638.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 30 5.3 gb|GL376634.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 30 5.3 gb|GL376619.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 30 5.3 gb|GL376610.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 30 7.0 gb|GL376625.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 30 9.1 gb|GL376615.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 30 9.1 gb|GL376614.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 30 9.1 gb|GL376613.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 30 9.1 gb|GL376595.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 30 9.1 gb|GL376588.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 30 9.1 gb|GL376564.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 30 9.1 >gb|GL376622.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582025, whole genome shotgun sequence Length = 692778 Score = 34.7 bits (78), Expect = 0.28 Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 4/67 (5%) Frame = -3 Query: 2 GRARPGQRGPPS----PGPAAQPPAPPRRRARSLALLGALLAAAAAAAVRVCARHAEAQA 57 G A P RGP + PG +PP+ RR RS GA + A + AQ+ Sbjct: 149398 GAATPRTRGPRTSTCPPGSTLRPPSWSLRRGRSRRATGAHSQSRATPSYAAAVATVAAQS 149219 Query: 58 AARQELA 64 AAR+ +A Sbjct: 149218 AARRPVA 149198 >gb|GL376604.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582007, whole genome shotgun sequence Length = 931704 Score = 34.7 bits (78), Expect = 0.28 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%) Frame = -3 Query: 6 PGQRGPPSPGPAAQPPAPPRRRARSLALLGALLAAAAAAA-VRVCARHAEAQAAARQE 62 P ++ PP P P + P PPRR + S ++ A A+ A V AR+ + + A R+E Sbjct: 272788 PRRQPPPHPPPPRRLPPPPRRPSASTSVSKATPPTASLAQFAAVAARNQQGRTARRRE 272615 Score = 30.4 bits (67), Expect = 5.3 Identities = 26/60 (43%), Positives = 31/60 (51%), Gaps = 3/60 (5%) Frame = -3 Query: 3 RARPGQRG-PPSPGPAAQPPAPPRRRARSLALLGALLAAAAAAAVRVC--ARHAEAQAAA 59 R+R G RG S A P P AR+ A L A AAAA A+ R C + AE +AAA Sbjct: 826219 RSRGGARGGATSAATTATVPHPRPPSARTYAELTAARAAAAIASRRCCWQSVFAERRAAA 826040 Score = 30.0 bits (66), Expect = 7.0 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 4/61 (6%) Frame = -3 Query: 6 PGQRGPPSPG---PAAQPPAPPRRRARSLALLGALLAAAAAAA-VRVCARHAEAQAAARQ 61 P +R PP P P + P PPRR + S ++ A A+ A V AR+ + + A R+ Sbjct: 275221 PPRRLPPPPRRLPPPRRLPPPPRRPSASTSVSKATPPTASLAQFAAVAARNQQGRTARRR 275042 Query: 62 E 62 E Sbjct: 275041 E 275039 >gb|GL376602.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582005, whole genome shotgun sequence Length = 580922 Score = 34.3 bits (77), Expect = 0.37 Identities = 29/71 (40%), Positives = 33/71 (46%) Frame = -3 Query: 3 RARPGQRGPPSPGPAAQPPAPPRRRARSLALLGALLAAAAAAAVRVCARHAEAQAAARQE 62 R R RGPP P P A PP R A S A+ AA AAA AR A + AR E Sbjct: 5067 RTRSPARGPP-PWPGAAPPR--RAHASSAAVAARPRPAAPAAAAPPRARAAPPSSWARGE 4897 Query: 63 LALKTLGTDGL 73 L + +GL Sbjct: 4896 ELLGIMR*EGL 4864 >gb|GL376627.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582030, whole genome shotgun sequence Length = 300584 Score = 33.9 bits (76), Expect = 0.48 Identities = 20/48 (41%), Positives = 24/48 (50%) Frame = +2 Query: 3 RARPGQRGPPSPGPAAQPPAPPRRRARSLALLGALLAAAAAAAVRVCA 50 R+ P RGP P A+P P RR S + AAAAA + R CA Sbjct: 130844 RSGPAGRGPTPGCPGARPRLRPPRRPGSGTGRASAAAAAAATSSRTCA 130987 Score = 30.0 bits (66), Expect = 7.0 Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 1/70 (1%) Frame = +2 Query: 1 MGRARPGQRGPPSPGPAAQPP-APPRRRARSLALLGALLAAAAAAAVRVCARHAEAQAAA 59 +GR RP P P ++P A + ++L L GAL A + V + AQAAA Sbjct: 254789 LGRERPTAETYPGTAPLSEPETAGIYKFLKTLPLAGALDVHAYSNLVLRPFGNQAAQAAA 254968 Query: 60 RQELALKTLG 69 LKTLG Sbjct: 254969 PYGAKLKTLG 254998 >gb|GL376624.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582027, whole genome shotgun sequence Length = 666937 Score = 33.5 bits (75), Expect = 0.63 Identities = 36/107 (33%), Positives = 43/107 (40%), Gaps = 6/107 (5%) Frame = -2 Query: 25 RRRARSLALLGALLAAAAAAAVRVCARHAEAQAAARQELALKTLGTDGLFLFSSLDTDGD 84 RRR RS AAAA+ R R A A A RQE L T GT + F + D Sbjct: 572100 RRRGRSCC---GEAEAAAASRARDARREARAPAGVRQEELLPTAGTYVVLFFF*AN---D 571939 Query: 85 MYISP------EEFKPIAEKLTGSCSVTQTGVQWCSHSSLQPQLPWL 125 YI P E PI + S T V C +SS + W+ Sbjct: 571938 YYIQP*LNTLRERSGPI------NTSFALTWVTICIYSSSMCDVGWV 571816 >gb|GL376570.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875581368, whole genome shotgun sequence Length = 308540 Score = 33.5 bits (75), Expect = 0.63 Identities = 18/51 (35%), Positives = 24/51 (47%) Frame = -1 Query: 1 MGRARPGQRGPPSPGPAAQPPAPPRRRARSLALLGALLAAAAAAAVRVCAR 51 + R PG RGPPS PP+ R L + L AA ++ R+C R Sbjct: 205760 LDRRDPGARGPPSQDDCCVPPSAMEFVPRGLVHSDSRLYAARSSPTRLCLR 205608 >gb|GL376626.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582029, whole genome shotgun sequence Length = 1550222 Score = 33.1 bits (74), Expect = 0.82 Identities = 16/29 (55%), Positives = 17/29 (58%) Frame = +1 Query: 2 GRARPGQRGPPSPGPAAQPPAPPRRRARS 30 GR RPG R PP P P P RRRAR+ Sbjct: 966079 GRTRPGTRAPPPPSP------PARRRART 966147 Score = 30.8 bits (68), Expect = 4.1 Identities = 20/63 (31%), Positives = 28/63 (44%) Frame = -3 Query: 4 ARPGQRGPPSPGPAAQPPAPPRRRARSLALLGALLAAAAAAAVRVCARHAEAQAAARQEL 63 ARP + PPS G + P RRRAR A A A +++ + QA R + Sbjct: 236520 ARPPEAAPPSRGTSPGLGGPTRRRARRWATAAPRRAGATSSS----SARRSLQAGVRMRV 236353 Query: 64 ALK 66 +K Sbjct: 236352 CVK 236344 Score = 30.4 bits (67), Expect = 5.3 Identities = 14/37 (37%), Positives = 23/37 (62%) Frame = +3 Query: 63 LALKTLGTDGLFLFSSLDTDGDMYISPEEFKPIAEKL 99 L +++G + +F+ D +GD I+ EEFK I +KL Sbjct: 1087347 LKARSMGVNTNAMFAEFDANGDGEITREEFKSILQKL 1087457 >gb|GL376603.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582006, whole genome shotgun sequence Length = 1270039 Score = 33.1 bits (74), Expect = 0.82 Identities = 18/43 (41%), Positives = 23/43 (53%) Frame = +3 Query: 99 LTGSCSVTQTGVQWCSHSSLQPQLPWLNUSSCLSLLRSTPAAS 141 + +CSV CS SSLQP+ P + SC S +RS A S Sbjct: 654531 IRSACSVCWRRTASCSFSSLQPRSPSSSSPSCSSSVRSASAES 654659 >gb|GL376592.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875581880, whole genome shotgun sequence Length = 568974 Score = 33.1 bits (74), Expect = 0.82 Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 14/84 (16%) Frame = -1 Query: 79 LDTDGDMYIS--PEEFKPIAEK------------LTGSCSVTQTGVQWCSHSSLQPQLPW 124 + TDGD+ I+ + +PIA K L GSCS ++ V W P+ PW Sbjct: 324915 MKTDGDITINVRKQHMEPIANKARRHLQRSWSDTLAGSCSRSRASVSW------SPRQPW 324754 Query: 125 LNUSSCLSLLRSTPAASCEEEELP 148 S C T + SC LP Sbjct: 324753 RKSSIC--RWHRTRSTSCCANTLP 324688 >gb|GL376620.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582023, whole genome shotgun sequence Length = 1683196 Score = 32.7 bits (73), Expect = 1.1 Identities = 25/63 (39%), Positives = 28/63 (44%), Gaps = 5/63 (7%) Frame = +1 Query: 3 RARPGQRGPPSPGPAAQPPAPPRRRARSL-----ALLGALLAAAAAAAVRVCARHAEAQA 57 R RP R PP A PP RR RS G LLA ++AV +C R A Sbjct: 80989 RRRPRCRLPPPWRAARWPPRSSRRLRRSCPT*TPGCHGPLLAPPPSSAVVLCTREASICE 81168 Query: 58 AAR 60 AAR Sbjct: 81169 AAR 81177 Score = 31.6 bits (70), Expect = 2.4 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 5/61 (8%) Frame = -3 Query: 5 RPGQRGPPSPGPAAQPPAPPRRRARSLALLGALLAAAAAAA-----VRVCARHAEAQAAA 59 R G PP P PA PP PP +R A+ A A A++ V C ++A A Sbjct: 859946 RAGAAAPP*PRPARTPPPPPPPTSRRQRRAHAVAACARASSGDLEPVPECC*FSQALGVA 859767 Query: 60 R 60 R Sbjct: 859766 R 859764 >gb|GL376590.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875581868, whole genome shotgun sequence Length = 538251 Score = 32.7 bits (73), Expect = 1.1 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 3/64 (4%) Frame = +2 Query: 94 PIAEKLTGSCSVTQTGVQWCSHSSLQPQLPWLNUSSCLSLLRST---PAASCEEEELPPD 150 P + K +CS ++ +W S + PW S C S +T + C+ +PP Sbjct: 456983 PASRKYVSACS*SRFSTKWSMPSKNNARFPWCRVSRCFSHCLTTAESKSTDCDSALVPPV 457162 Query: 151 PSEE 154 S++ Sbjct: 457163 MSQQ 457174 Score = 29.6 bits (65), Expect = 9.1 Identities = 19/46 (41%), Positives = 22/46 (47%) Frame = +3 Query: 15 GPAAQPPAPPRRRARSLALLGALLAAAAAAAVRVCARHAEAQAAAR 60 GP P PRR RS A + AA AAA +R R A+ A R Sbjct: 207630 GPGK*APCTPRRVPRSDAAAASGRAAHAAAGIRCARRPAKRGAKGR 207767 >gb|GL376605.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582008, whole genome shotgun sequence Length = 1405322 Score = 32.3 bits (72), Expect = 1.4 Identities = 28/75 (37%), Positives = 32/75 (42%), Gaps = 13/75 (17%) Frame = +1 Query: 3 RARPGQRGPPSPGPAAQPPAPPRRRA----------RSLALLGALLAAAAAAAVRVCARH 52 R P RG P+P A + PP R+ R G +LAAAAAAA R H Sbjct: 157336 RPWPRCRGSPTPAVACRASPPPAGRSPVAAGRTGRTRPAGHTGRILAAAAAAAGRTGRSH 157515 Query: 53 AEA---QAAARQELA 64 A AAAR A Sbjct: 157516 PAAVARTAAARTAAA 157560 Score = 29.6 bits (65), Expect = 9.1 Identities = 12/24 (50%), Positives = 14/24 (58%) Frame = -3 Query: 6 PGQRGPPSPGPAAQPPAPPRRRAR 29 P +R PP P P PP PPR+ R Sbjct: 420180 PPRRLPPRPPPRPPPPRPPRKLRR 420109 >gb|GL376577.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875581463, whole genome shotgun sequence Length = 305633 Score = 32.3 bits (72), Expect = 1.4 Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 2/51 (3%) Frame = +2 Query: 2 GRARPGQRGPPSPGPAAQPPAPPRRRARSLA--LLGALLAAAAAAAVRVCA 50 G P ++G PGPA +PP RR LA +L LL AA A R+ A Sbjct: 253775 GHPDPQRQGHHPPGPAVRPPVRRERRHAQLAARVLQGLLGAALLAPGRLHA 253927 >gb|GL376567.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875581354, whole genome shotgun sequence Length = 1199448 Score = 31.6 bits (70), Expect = 2.4 Identities = 21/49 (42%), Positives = 27/49 (55%) Frame = -3 Query: 11 PPSPGPAAQPPAPPRRRARSLALLGALLAAAAAAAVRVCARHAEAQAAA 59 PPSPGPA +P PR R+ SL AAA+ AA R R + A++ Sbjct: 343366 PPSPGPAGRP--LPRTRS-SLGGSSTASAAASTAATRTPIRRTSSLASS 343229 Score = 29.6 bits (65), Expect = 9.1 Identities = 19/52 (36%), Positives = 28/52 (53%) Frame = -2 Query: 17 AAQPPAPPRRRARSLALLGALLAAAAAAAVRVCARHAEAQAAARQELALKTL 68 AA PPA R + S A + AAA+AA+ +R A A +R+ ++TL Sbjct: 743393 AAAPPASAARVSSSGAPTSSRRAAASAASATTRSRAASRSAPSRRNSRVRTL 743238 >gb|GL376565.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875581314, whole genome shotgun sequence Length = 162732 Score = 31.6 bits (70), Expect = 2.4 Identities = 13/27 (48%), Positives = 16/27 (59%) Frame = +2 Query: 2 GRARPGQRGPPSPGPAAQPPAPPRRRA 28 G R R PP GP +P +PPRRR+ Sbjct: 106658 GSRRSRSRSPPRNGPGFRPGSPPRRRS 106738 >gb|GL376636.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582039, whole genome shotgun sequence Length = 1829366 Score = 31.2 bits (69), Expect = 3.1 Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 5/69 (7%) Frame = -3 Query: 86 YISPEEFKPIAEKLTGSCSVTQTGVQWCSHSSL----QPQLPW-LNUSSCLSLLRSTPAA 140 Y + KP+ LT +C+ T T +CS SS P P SS LSL P Sbjct: 63264 YTYEDTCKPLRRTLTKNCNGTVTSTHFCSSSSAAAS*SPSAPSPRRASSSLSLSAPPPLY 63085 Query: 141 SCEEEELPP 149 S E + P Sbjct: 63084 STSESAVSP 63058 Score = 29.6 bits (65), Expect = 9.1 Identities = 19/48 (39%), Positives = 22/48 (45%) Frame = +3 Query: 3 RARPGQRGPPSPGPAAQPPAPPRRRARSLALLGALLAAAAAAAVRVCA 50 R R G G +PG PPA PR RA LA A + + A CA Sbjct: 342279 RTRAGSVGSETPGKL--PPAAPRARAPPLAAARADRSRGRSGAACACA 342416 >gb|GL376597.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875581984, whole genome shotgun sequence Length = 290057 Score = 31.2 bits (69), Expect = 3.1 Identities = 14/26 (53%), Positives = 16/26 (61%) Frame = -3 Query: 4 ARPGQRGPPSPGPAAQPPAPPRRRAR 29 AR GQR P+P PA PP+ P R R Sbjct: 248226 ARRGQRRQPAPRPAPSPPSAPVRARR 248149 >gb|GL376585.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875581789, whole genome shotgun sequence Length = 837833 Score = 31.2 bits (69), Expect = 3.1 Identities = 26/66 (39%), Positives = 30/66 (45%), Gaps = 5/66 (7%) Frame = +3 Query: 3 RARPGQRGPPSPGPAAQPPAPPRRRARSLALLGALL-----AAAAAAAVRVCARHAEAQA 57 RARP R P SPG + PRRR R A GA AA+A AV + + Sbjct: 426357 RARPRGR-PTSPGRRGRAARAPRRRPRPPACAGACTGPPRSAASACTAVAY*WSTYQKER 426533 Query: 58 AARQEL 63 A R EL Sbjct: 426534 ALRNEL 426551 Score = 29.6 bits (65), Expect = 9.1 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 4/56 (7%) Frame = +1 Query: 3 RARPGQRGPPSPGPAAQPPAPPRRRARSLALLGALLAAAAAAAVRV----CARHAE 54 R P +P PAA PPA PR R+ A A+ +AA R+ C+ H + Sbjct: 154972 RRTPAAAQARAPAPAAAPPARPRCAPRA*AAACAVRSAATGRTRRLRAPACSLHLQ 155139 >gb|GL376573.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875581402, whole genome shotgun sequence Length = 979788 Score = 31.2 bits (69), Expect = 3.1 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 1/37 (2%) Frame = +2 Query: 10 GPPSPG-PAAQPPAPPRRRARSLALLGALLAAAAAAA 45 GPPS P A PP P ++R +L A+ A AAAA Sbjct: 877322 GPPSSNMPVAAPPHQPNPKSRMEMMLAAVTTAEAAAA 877432 Score = 30.8 bits (68), Expect = 4.1 Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 4/30 (13%) Frame = +1 Query: 3 RARPGQRG----PPSPGPAAQPPAPPRRRA 28 RAR +RG P +P A QPP PPR+RA Sbjct: 500740 RARRERRGSWQ*PCAPAAAPQPPPPPRQRA 500829 Score = 30.4 bits (67), Expect = 5.3 Identities = 15/33 (45%), Positives = 18/33 (54%) Frame = +3 Query: 12 PSPGPAAQPPAPPRRRARSLALLGALLAAAAAA 44 PSPGP +P PP R +R+ L A A A A Sbjct: 822474 PSPGPRTRPVGPPARASRTRRRLRARTARALRA 822572 Score = 29.6 bits (65), Expect = 9.1 Identities = 25/68 (36%), Positives = 28/68 (41%), Gaps = 2/68 (2%) Frame = +2 Query: 3 RARPGQRGPPSPGPAAQPPAPPRRRA--RSLALLGALLAAAAAAAVRVCARHAEAQAAAR 60 R R R SP P A PA PRRRA R L A +A V R A A Sbjct: 144227 RKRSSSRAAVSPAPEAGEPAAPRRRAHRRLHQRPPRLRVPGAGSAAGVPPRGPSAVALRP 144406 Query: 61 QELALKTL 68 + LA + L Sbjct: 144407 RRLAHRRL 144430 Score = 29.6 bits (65), Expect = 9.1 Identities = 25/68 (36%), Positives = 28/68 (41%), Gaps = 2/68 (2%) Frame = -3 Query: 3 RARPGQRGPPSPGPAAQPPAPPRRRA--RSLALLGALLAAAAAAAVRVCARHAEAQAAAR 60 R R R SP P A PA PRRRA R L A +A V R A A Sbjct: 141892 RKRSSSRAAVSPAPEAGEPAAPRRRAHRRLHQRPPRLRVPGAGSAAGVPPRGPSAVALRP 141713 Query: 61 QELALKTL 68 + LA + L Sbjct: 141712 RRLAHRRL 141689 >gb|GL376631.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582034, whole genome shotgun sequence Length = 1169325 Score = 30.8 bits (68), Expect = 4.1 Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 1/58 (1%) Frame = +3 Query: 3 RARPGQRGPPSPGP-AAQPPAPPRRRARSLALLGALLAAAAAAAVRVCARHAEAQAAA 59 RAR P +P P AQPP+ PRR +L A++ AA R R A AA Sbjct: 130839 RARAPCARPWAPAPWRAQPPSQPRRPRSDRSLHRLAAASSPHAAPRCATRQCTAARAA 131012 Score = 30.8 bits (68), Expect = 4.1 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%) Frame = +2 Query: 107 QTGVQWCSHSSLQPQLPWLNUSSCLSLLRST-PAASC 142 +T +QW L+ +LPWL SC SL + T PA+ C Sbjct: 749099 RTYLQWMDACLLEHRLPWLCTISC*SLTQKTLPASIC 749209 >gb|GL376608.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582011, whole genome shotgun sequence Length = 418791 Score = 30.8 bits (68), Expect = 4.1 Identities = 23/49 (46%), Positives = 24/49 (48%), Gaps = 3/49 (6%) Frame = +2 Query: 16 PAAQPPAPPRRRARSLALLGALLAAAAAAA---VRVCARHAEAQAAARQ 61 PAA P P R S LL A L AAA A VR C+ EAQ RQ Sbjct: 207242 PAAPPDQIPSARMLSPRLLLARLPAAAVVARRCVRKCSASREAQLHKRQ 207388 >gb|GL376638.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582041, whole genome shotgun sequence Length = 1261388 Score = 30.4 bits (67), Expect = 5.3 Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 12/73 (16%) Frame = -3 Query: 3 RARPGQRGPPSPGPAAQPPAPPRRRARSL------ALLG-----ALLAAAAAAAVRVCAR 51 R RPG+R +P Q APP+ AR+ L G A AA A ++V A Sbjct: 526548 RDRPGRRQARAPARRRQEGAPPQEAARTTEQVRPERLCGRDCGQAQAYRAALAPLKVQAE 526369 Query: 52 HAEA-QAAARQEL 63 HA+A + AR++L Sbjct: 526368 HADAGRERARRDL 526330 Score = 30.0 bits (66), Expect = 7.0 Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 6/57 (10%) Frame = -2 Query: 9 RGPPSPG---PAAQPPAPPRRRARSLALLGALLAAAAAAAVRV---CARHAEAQAAA 59 R PP+PG P P P R + S AL A A +R CARHA + +A Sbjct: 209893 RAPPAPGARAPQGPPTRPTSRTSWSSRSAHALPERALARGLRAAAWCARHAPSWCSA 209723 >gb|GL376634.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582037, whole genome shotgun sequence Length = 1414051 Score = 30.4 bits (67), Expect = 5.3 Identities = 23/58 (39%), Positives = 25/58 (43%), Gaps = 4/58 (6%) Frame = -2 Query: 7 GQRGPP----SPGPAAQPPAPPRRRARSLALLGALLAAAAAAAVRVCARHAEAQAAAR 60 G RG P SP P P P RR S A AA + R HA A+AAAR Sbjct: 1049967 GSRGRPVLRVSPWPGTSAPRP*ARRTTSRARPKPRTRPRAATS*RRPRAHARARAAAR 1049794 >gb|GL376619.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582022, whole genome shotgun sequence Length = 784545 Score = 30.4 bits (67), Expect = 5.3 Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 1/86 (1%) Frame = -1 Query: 17 AAQPPAPPRRRARSLALLGALLAAAAAAAVRVCARHAEAQAAARQELALKTLGTDGLFLF 76 AA P PPR ALL L+A A A R+ R QA R + + FL Sbjct: 521730 AAAPQRPPRAPDSVEALLFVLVAVTATARARLEPRCERVQARVRAPRDARAVPGKAAFLA 521551 Query: 77 SSLDTDGDMYIS-PEEFKPIAEKLTG 101 + G + +S + +P A +L G Sbjct: 521550 RAAAAAGHVVLSAAPDAEPRAGRLGG 521473 >gb|GL376610.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582013, whole genome shotgun sequence Length = 390037 Score = 30.0 bits (66), Expect = 7.0 Identities = 22/52 (42%), Positives = 22/52 (42%) Frame = +3 Query: 6 PGQRGPPSPGPAAQPPAPPRRRARSLALLGALLAAAAAAAVRVCARHAEAQA 57 P RG P AAQ PAP R A AA A R CA A AQA Sbjct: 230232 PHGRGREGPDGAAQVPAPQGR-------------ARAAIAARACAALAAAQA 230348 >gb|GL376625.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582028, whole genome shotgun sequence Length = 960197 Score = 29.6 bits (65), Expect = 9.1 Identities = 17/52 (32%), Positives = 24/52 (46%) Frame = +3 Query: 8 QRGPPSPGPAAQPPAPPRRRARSLALLGALLAAAAAAAVRVCARHAEAQAAA 59 +R P P + PP+ R ALL L + AA +R+C +A AA Sbjct: 448191 ERPDPCPSSSDMPPSMNAPRGLHQALLLLFLLSLTAAHLRICRPSRQAATAA 448346 >gb|GL376615.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582018, whole genome shotgun sequence Length = 689162 Score = 29.6 bits (65), Expect = 9.1 Identities = 18/45 (40%), Positives = 21/45 (46%) Frame = -3 Query: 16 PAAQPPAPPRRRARSLALLGALLAAAAAAAVRVCARHAEAQAAAR 60 P + +PPR R R LG AA AAA R +R AA R Sbjct: 529428 PGRRTCSPPRVRLRERTRLGRHPAATAAAVARTRSRRRRRTAAQR 529294 >gb|GL376614.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582017, whole genome shotgun sequence Length = 244446 Score = 29.6 bits (65), Expect = 9.1 Identities = 22/59 (37%), Positives = 27/59 (45%) Frame = -2 Query: 2 GRARPGQRGPPSPGPAAQPPAPPRRRARSLALLGALLAAAAAAAVRVCARHAEAQAAAR 60 GRARP R P + AA PP R ARS + G +A A A + A+A R Sbjct: 97487 GRARP--RRPRTACAAAPPPMRRTRAARSSSTRGRRIAGRRGTARSTRAGPSRARACTR 97317 >gb|GL376613.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582016, whole genome shotgun sequence Length = 784520 Score = 29.6 bits (65), Expect = 9.1 Identities = 20/56 (35%), Positives = 24/56 (42%) Frame = +2 Query: 3 RARPGQRGPPSPGPAAQPPAPPRRRARSLALLGALLAAAAAAAVRVCARHAEAQAA 58 RA P R PP P A PRRR R +AA +AA CA + +A Sbjct: 91934 RAAPRTRRPP---PRAAAARRPRRRGRGTR*RPLRCSAARSAATAACATRTSSPSA 92092 >gb|GL376595.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875581980, whole genome shotgun sequence Length = 233943 Score = 29.6 bits (65), Expect = 9.1 Identities = 28/114 (24%), Positives = 41/114 (35%), Gaps = 16/114 (14%) Frame = -2 Query: 49 CARHAEAQAAARQELALKTLGTDGLFLFSSL--DTDG------DMYISPEEFKPIAEKLT 100 C R+ A A D + +SL DTDG + + + P + Sbjct: 195047 CQRNGGKNAVHSSVSARSGANADASAVVTSLL*DTDGACCT*GSAFAAASKSSPCTPVVA 194868 Query: 101 GSCSVTQT--------GVQWCSHSSLQPQLPWLNUSSCLSLLRSTPAASCEEEE 146 C T T +C+ SSL PQLP L S+ + + S +S E Sbjct: 194867 SLCGTTTTHSSPASSSSSSYCTSSSLSPQLPELAASNTMPMSISAALSSLPSAE 194706 >gb|GL376588.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875581841, whole genome shotgun sequence Length = 342061 Score = 29.6 bits (65), Expect = 9.1 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = +1 Query: 185 LSGLRNWTAAASPSAVFATRHFQPFLPPP 213 L G R W ++ SA++ T H+ P LPPP Sbjct: 40522 LLGGRGWRSSCRFSALY*TAHWPPDLPPP 40608 >gb|GL376564.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875581313, whole genome shotgun sequence Length = 1115623 Score = 29.6 bits (65), Expect = 9.1 Identities = 49/204 (24%), Positives = 68/204 (33%), Gaps = 33/204 (16%) Frame = -2 Query: 83 GDMYISPEEFKPIAEKLTGSCSVTQTGVQWCSHSSLQPQLPWLNUSSCLSLLRSTPAASC 142 G M + PE ++ + C W + P L L ++L A C Sbjct: 568599 GSMLLRPELLAVVSLNVAPCC--------WTGGVTTTPPLCSLQKRPFVALRMHASIAHC 568444 Query: 143 EEEELPPDPSEETLTIEARFQPL-----LPETMTKSKDGFLGVSRLALSGLRN-----WT 192 E LPP ++ L Q + P T+S + + L SG+R W Sbjct: 568443 E---LPPWVAQ*LLASAFLAQFIERHLRYPPWPTQSPSYW---TTLLHSGMRQRLPPPWE 568282 Query: 193 AAASPSAVFATRHFQP-FLPPPG-----------------QELGEPWWIIPSELSMFTGY 234 A P T+ ++P FLPPP Q L PW L+ Sbjct: 568281 MHAPPLCARLTQPWKPHFLPPPWIQQKPPVCALLVHSGRWQRLPPPWATQQPRLTTLVVQ 568102 Query: 235 LSNNRFYPPP-----PKGKEVIIH 253 S F PPP P G V+ H Sbjct: 568101 PSTEHFLPPPCEMHKPPGLAVLAH 568030 Score = 29.6 bits (65), Expect = 9.1 Identities = 22/57 (38%), Positives = 25/57 (43%), Gaps = 7/57 (12%) Frame = -3 Query: 3 RARPGQRGP---PSPGPAAQPPAPPR----RRARSLALLGALLAAAAAAAVRVCARH 52 R G R P PSP +P +P R R AR G L AAA + CARH Sbjct: 551807 RTSSGARRPSRAPSPWQPRRPSSPARAV*GRAARPRRASGPLPGLAAACSRAECARH 551637 Database: P.ultimum/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 42,801,618 Number of sequences in database: 82 Lambda K H 0.318 0.134 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 35,226,435 Number of Sequences: 82 Number of extensions: 676690 Number of successful extensions: 7191 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 36 Number of HSP's successfully gapped in prelim test: 51 Number of HSP's that attempted gapping in prelim test: 5040 Number of HSP's gapped (non-prelim): 4978 length of query: 590 length of database: 14,267,206 effective HSP length: 108 effective length of query: 482 effective length of database: 14,258,350 effective search space: 6872524700 effective search space used: 6872524700 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 65 (29.6 bits)