TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000018_1.0 # Protein # Selenoprotein N (SelN) # Homo sapiens # Complete (590 letters) Database: P.tricornutum/genome.fa 31 sequences; 23,733,684 total letters Searching...............................done Score E Sequences producing significant alignments: (bits) Value gb|CM000608.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 34 0.21 gb|CM000616.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 33 0.35 gb|CM000631.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 32 0.78 gb|CM000622.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 32 0.78 gb|CM000633.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 32 1.3 gb|CM000617.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 31 1.7 gb|CM000609.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 31 2.3 gb|CM000629.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 30 3.9 gb|CM000621.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 30 3.9 gb|CM000620.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 30 3.9 gb|CM000607.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 30 5.1 gb|CM000613.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 29 8.7 >gb|CM000608.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 5, whole genome shotgun sequence Length = 1098047 Score = 34.3 bits (77), Expect = 0.21 Identities = 30/106 (28%), Positives = 45/106 (42%), Gaps = 5/106 (4%) Frame = +1 Query: 21 PAPPRRRARSLALLGALLAAAAAAAVRVCARHAEAQAAA-----RQELALKTLGTDGLFL 75 P+ P + R A + L+ A+ + VRV + A R+E GT LFL Sbjct: 505729 PSVPAAKKRRYAPIDLPLSMASVSDVRVLHQKTSMSFALQSSLNREEATWHAQGTTTLFL 505908 Query: 76 FSSLDTDGDMYISPEEFKPIAEKLTGSCSVTQTGVQWCSHSSLQPQ 121 + +S P+A L GSC V+Q VQ + + QP+ Sbjct: 505909 --TTPHPPTQPLSESSTVPLALHLRGSCQVSQVHVQTLTWTKNQPE 506040 >gb|CM000616.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 14, whole genome shotgun sequence Length = 829358 Score = 33.5 bits (75), Expect = 0.35 Identities = 36/148 (24%), Positives = 63/148 (42%), Gaps = 8/148 (5%) Frame = -2 Query: 2 GRARPGQRGPPSPGPAAQPPAPPRRRARS---LALLGALLAAAAAAAVRVCARHAEAQAA 58 GR + GQ G +P A RR R+ +AL A + ++ R R +++ Sbjct: 230959 GRYQQGQPGETAPHQARIGRIGFPRRKRTGV*VALFEPFQAEYSESSTRPRGRGGSIRSS 230780 Query: 59 ARQELALKTLGTDGLFLFSSLDTDGDMYISPEEFK-----PIAEKLTGSCSVTQTGVQWC 113 ++ L+ G S+ T+ D ++ + P A C+++ GVQWC Sbjct: 230779 RAKDFLLEGQRYSG----SAASTNRDERVNQRGDRTPRA*PTAHFTRYGCNISNLGVQWC 230612 Query: 114 SHSSLQPQLPWLNUSSCLSLLRSTPAAS 141 + ++ QP+LP +LR P A+ Sbjct: 230611 ARNA-QPRLP--------DVLRGMPRAN 230555 >gb|CM000631.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 29, whole genome shotgun sequence Length = 384256 Score = 32.3 bits (72), Expect = 0.78 Identities = 31/116 (26%), Positives = 46/116 (39%), Gaps = 1/116 (0%) Frame = +3 Query: 149 PDPSEETLTIEARFQPLLPETMTKSKDGFLGVSRLAL-SGLRNWTAAASPSAVFATRHFQ 207 PD T + R +PL P +TKS+ + G+S + +G + +A P Sbjct: 112338 PDVPPATSFLHRRKRPLQPGELTKSQR-YSGLSHVTEPTGTHSQPPSAPPG--------- 112487 Query: 208 PFLPPPGQELGEPWWIIPSELSMFTGYLSNNRFYPPPPKGKEVIIHRLLSMFHPRP 263 P PPP P W + ++ PP K + HR+ S FH RP Sbjct: 112488 PQQPPPPSGRFPPSWSTMMDATVH------------PPATKSLPTHRVPSDFHTRP 112619 >gb|CM000622.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 20, whole genome shotgun sequence Length = 683011 Score = 32.3 bits (72), Expect = 0.78 Identities = 37/148 (25%), Positives = 54/148 (36%), Gaps = 12/148 (8%) Frame = +1 Query: 110 VQWCSHSSLQPQLPWLNUSSCLSLLRSTPAASCEE--EELPPDPS-----EETLTIEARF 162 V C+H S P LP ++ L R PA+S E + DP E T ++ Sbjct: 139399 VSVCNHDSPTPPLP---STTSLFRQRPRPASSTMEASRQSGKDPFAGANLEATFEVDEET 139569 Query: 163 QPLLPETMTKSKDGFLGVSRLALSGLRNWTAAASPSAVFATRHFQPFLPPPGQELG--EP 220 P + D R ++ P +A+ QPF PP LG +P Sbjct: 139570 DYGFPHHVGSFTDDEFPPRSDMKKRKRRSPMSSPPYVPYASMPLQPFYPPYNSTLGPPQP 139749 Query: 221 WWIIPSELSMFTG---YLSNNRFYPPPP 245 P ++ G Y + +YPP P Sbjct: 139750 PGYFPGNVASAAGNTYYGNTTDYYPPLP 139833 >gb|CM000633.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 31, whole genome shotgun sequence Length = 258242 Score = 31.6 bits (70), Expect = 1.3 Identities = 20/65 (30%), Positives = 37/65 (56%) Frame = +3 Query: 139 AASCEEEELPPDPSEETLTIEARFQPLLPETMTKSKDGFLGVSRLALSGLRNWTAAASPS 198 +AS ++E+LPP +E +++ LLP + ++ D +R A+S L+ A AS + Sbjct: 165825 SASKQQEDLPPQTQQEDSPTQSKPNSLLPPSSSEPNDSPEDTNRKAIS-LKVSPAVASAA 166001 Query: 199 AVFAT 203 A+ A+ Sbjct: 166002 ALAAS 166016 >gb|CM000617.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 15, whole genome shotgun sequence Length = 814910 Score = 31.2 bits (69), Expect = 1.7 Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 9/74 (12%) Frame = -3 Query: 77 SSLDTD---GDMYISPEEFKPIAEKLTGSCSVTQTGVQWCSHSS------LQPQLPWLNU 127 S++D D G +S F A+ G C TG +W SS QP+ P L Sbjct: 662250 STIDCDWVGGTFNVSDGYFARKADGRDGLCVCPTTGTRWFVDSSSPQDLLFQPERPGLFL 662071 Query: 128 SSCLSLLRSTPAAS 141 +CLSL P + Sbjct: 662070 ETCLSLTVPVPTGN 662029 >gb|CM000609.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 6, whole genome shotgun sequence Length = 1035082 Score = 30.8 bits (68), Expect = 2.3 Identities = 12/24 (50%), Positives = 14/24 (58%) Frame = +1 Query: 5 RPGQRGPPSPGPAAQPPAPPRRRA 28 RPG GPP P +PP PP + A Sbjct: 853270 RPGPPGPPPPSGRPKPPPPPPKSA 853341 >gb|CM000629.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 27, whole genome shotgun sequence Length = 404298 Score = 30.0 bits (66), Expect = 3.9 Identities = 16/31 (51%), Positives = 17/31 (54%) Frame = -1 Query: 7 GQRGPPSPGPAAQPPAPPRRRARSLALLGAL 37 G GPPSP P A PRRR R+ A G L Sbjct: 266172 GTEGPPSPRPVA-TVTKPRRRTRTSATAGPL 266083 >gb|CM000621.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 19, whole genome shotgun sequence Length = 690427 Score = 30.0 bits (66), Expect = 3.9 Identities = 14/25 (56%), Positives = 15/25 (60%) Frame = +2 Query: 11 PPSPGPAAQPPAPPRRRARSLALLG 35 PPSP QPPAPP R S + LG Sbjct: 248849 PPSPQQREQPPAPPIVRRSSRSTLG 248923 Score = 28.9 bits (63), Expect = 8.7 Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 7/63 (11%) Frame = +1 Query: 100 TGSCSVTQTGVQWCSHSSLQPQLPWLNUSS-------CLSLLRSTPAASCEEEELPPDPS 152 T + ++ TG +C HSS PW N + ++ P E +P +P Sbjct: 410011 TTTRNIKTTGGTFCPHSSEGGSFPWSNCRCVRIASG*IICMISLIP*VGSMESSIPKEPK 410190 Query: 153 EET 155 +ET Sbjct: 410191 DET 410199 >gb|CM000620.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 18, whole genome shotgun sequence Length = 702471 Score = 30.0 bits (66), Expect = 3.9 Identities = 23/76 (30%), Positives = 30/76 (39%) Frame = -3 Query: 6 PGQRGPPSPGPAAQPPAPPRRRARSLALLGALLAAAAAAAVRVCARHAEAQAAARQELAL 65 P R P SP PPA R + AA VR+C +QAA R+ Sbjct: 478774 PKARTPASPRIPIVPPAAKHERPQQRP-------AANCICVRICMCIYPSQAAKRENTGQ 478616 Query: 66 KTLGTDGLFLFSSLDT 81 K +G+ F +DT Sbjct: 478615 KFRNREGMGPFLVVDT 478568 >gb|CM000607.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 4, whole genome shotgun sequence Length = 1360148 Score = 29.6 bits (65), Expect = 5.1 Identities = 15/50 (30%), Positives = 25/50 (50%) Frame = -2 Query: 111 QWCSHSSLQPQLPWLNUSSCLSLLRSTPAASCEEEELPPDPSEETLTIEA 160 QWC+H ++ L ++ + L R A ++P +P E+T IEA Sbjct: 691507 QWCAHDKIEESL--ISLRNALQAARKELKALGVAAKVPVEPEEQTQLIEA 691364 >gb|CM000613.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 10, whole genome shotgun sequence Length = 976485 Score = 28.9 bits (63), Expect = 8.7 Identities = 13/25 (52%), Positives = 17/25 (68%) Frame = -1 Query: 4 ARPGQRGPPSPGPAAQPPAPPRRRA 28 +RP RGPP+P P Q P P +RR+ Sbjct: 619572 SRPRPRGPPAPHPPKQ-PVPRQRRS 619501 Database: P.tricornutum/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 23,733,684 Number of sequences in database: 31 Lambda K H 0.318 0.134 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 19,135,940 Number of Sequences: 31 Number of extensions: 351762 Number of successful extensions: 2558 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 10 Number of HSP's that attempted gapping in prelim test: 2364 Number of HSP's gapped (non-prelim): 721 length of query: 590 length of database: 7,911,228 effective HSP length: 104 effective length of query: 486 effective length of database: 7,908,004 effective search space: 3843289944 effective search space used: 3843289944 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 63 (28.9 bits)