TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000018_1.0 # Protein # Selenoprotein N (SelN) # Homo sapiens # Complete (590 letters) Database: H.arabidopsidis/genome.fa 5422 sequences; 67,459,135 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|ABWE01000059.1| Hyaloperonospora parasitica strain Emoy2 v-7.... 35 0.33 gb|ABWE01001719.1| Hyaloperonospora parasitica strain Emoy2 v-7.... 33 0.96 gb|ABWE01000299.1| Hyaloperonospora parasitica strain Emoy2 v-7.... 33 1.3 gb|ABWE01000532.1| Hyaloperonospora parasitica strain Emoy2 v-7.... 27 2.6 gb|ABWE01000393.1| Hyaloperonospora parasitica strain Emoy2 v-7.... 31 4.8 gb|ABWE01004059.1| Hyaloperonospora parasitica strain Emoy2 v-7.... 31 6.2 gb|ABWE01000770.1| Hyaloperonospora parasitica strain Emoy2 v-7.... 31 6.2 gb|ABWE01004483.1| Hyaloperonospora parasitica strain Emoy2 v-7.... 30 8.1 gb|ABWE01000137.1| Hyaloperonospora parasitica strain Emoy2 v-7.... 30 8.1 gb|ABWE01000124.1| Hyaloperonospora parasitica strain Emoy2 v-7.... 30 8.1 >gb|ABWE01000059.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont71.2, whole genome shotgun sequence Length = 96583 Score = 35.0 bits (79), Expect = 0.33 Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 15/110 (13%) Frame = +3 Query: 135 RSTPAASCEEEELPPDPSEETLTIEARFQPLLPETMTKSKDGFLGVSRLALSGL------ 188 RSTPA +E P D T + + P+ + M + ++ ++ +L+ Sbjct: 90948 RSTPA----DEPGPQDTRLSTKASKGQLSPI*DQIM---RGWYVLIATFSLNTSS*CTQN 91106 Query: 189 -RNWTAAASPSA--------VFATRHFQPFLPPPGQELGEPWWIIPSELS 229 RNW+ +++PS V A RH LP P + PWW + L+ Sbjct: 91107 *RNWSRSSAPSTSSCQRSIRVRAVRHCNRRLPMPSSTMSAPWWRVKFRLN 91256 Score = 32.7 bits (73), Expect = 1.6 Identities = 33/112 (29%), Positives = 47/112 (41%), Gaps = 8/112 (7%) Frame = -3 Query: 140 ASCEEEELPPDPSEETLTIEARFQPLLPETMTKSKDGFLGVSRLALS------GLRNWTA 193 AS + +E P LT R E+ + ++G + LS R+ T Sbjct: 8903 ASIDRDEFVIGPPRSELTDSLRSATTPRESPLSALRPWMGGTDQGLSYSTRPAAARDRTC 8724 Query: 194 AASPSAV--FATRHFQPFLPPPGQELGEPWWIIPSELSMFTGYLSNNRFYPP 243 A P + FAT +F P P L E W I+P + M G L ++R YPP Sbjct: 8723 TAQPKTMERFATCNFCPSAMSPIGHLLETW*IVPG-IEMVVG-LRHHRSYPP 8574 >gb|ABWE01001719.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont75.17, whole genome shotgun sequence Length = 10000 Score = 33.5 bits (75), Expect = 0.96 Identities = 34/134 (25%), Positives = 48/134 (35%), Gaps = 7/134 (5%) Frame = -2 Query: 4 ARPGQRGPPSPGPAAQPPAPPRRRARSLALLGA----LLAAAAAAAVRVCARHAEAQAAA 59 +RP R PP P P P+P RR+ L + + LL AA++ A++ A Sbjct: 9789 SRPRARPPPPPAPDGPSPSPRNRRSHRLQPITSRSKPLLPLMTAASLE------RARSRA 9628 Query: 60 RQELALKTLGTDGLFLFSSLDTDGDMYISPEEFKPIAEKLTGSCSVTQTGVQWCS---HS 116 RQ+ G+ SS + P +P S T G W S Sbjct: 9627 RQQPQSSRRGS------SSCSASASFWTRPSSLQPAHT*ARASRRRTSCG*CWTKPSVPS 9466 Query: 117 SLQPQLPWLNUSSC 130 + W SSC Sbjct: 9465 RWNKRRSWCGTSSC 9424 >gb|ABWE01000299.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont59.13, whole genome shotgun sequence Length = 52353 Score = 33.1 bits (74), Expect = 1.3 Identities = 27/68 (39%), Positives = 33/68 (48%), Gaps = 2/68 (2%) Frame = +1 Query: 5 RPGQR--GPPSPGPAAQPPAPPRRRARSLALLGALLAAAAAAAVRVCARHAEAQAAARQE 62 +P QR PPS GP A PP R + RS AL+G +C R QA A+ + Sbjct: 11821 QPAQR*PSPPSHGPRADPPWRERGQHRSPALIG-------WRPQSLCRR---VQAPAQLQ 11970 Query: 63 LALKTLGT 70 LAL GT Sbjct: 11971 LALNGPGT 11994 >gb|ABWE01000532.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont189.3, whole genome shotgun sequence Length = 37489 Score = 26.6 bits (57), Expect(2) = 2.6 Identities = 11/22 (50%), Positives = 13/22 (59%) Frame = +1 Query: 2 GRARPGQRGPPSPGPAAQPPAP 23 GRAR ++ PPS P PAP Sbjct: 23059 GRARASEKKPPSREPLPHAPAP 23124 Score = 23.5 bits (49), Expect(2) = 2.6 Identities = 17/60 (28%), Positives = 32/60 (53%) Frame = +3 Query: 20 PPAPPRRRARSLALLGALLAAAAAAAVRVCARHAEAQAAARQELALKTLGTDGLFLFSSL 79 PP P ++ +++ A G+ +++AAAAV A + A ++ L ++ DG L+ L Sbjct: 23175 PPQPQQKNSKTHAWSGS--SSSAAAAVHAAAGASRDTDARQR*LTVRNF--DGTELYRDL 23342 >gb|ABWE01000393.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont124.2, whole genome shotgun sequence Length = 45254 Score = 31.2 bits (69), Expect = 4.8 Identities = 24/60 (40%), Positives = 26/60 (43%), Gaps = 6/60 (10%) Frame = +3 Query: 7 GQRGPPSPG-PAAQPPAPPRRRARSLALLGA-----LLAAAAAAAVRVCARHAEAQAAAR 60 G RGPPSPG P P P A A A AAAA R AR A+ +A R Sbjct: 15840 GARGPPSPGPPLVTRPQDPTATASGSATAAAGKRPREPAAAARGEGRAVARGADVRAGER 16019 >gb|ABWE01004059.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont2747.1, whole genome shotgun sequence Length = 1267 Score = 30.8 bits (68), Expect = 6.2 Identities = 16/32 (50%), Positives = 17/32 (53%), Gaps = 2/32 (6%) Frame = +3 Query: 2 GRARPGQRGPPSPGPAAQPPAPPR--RRARSL 31 GR P R P+P P PP PPR R RSL Sbjct: 948 GRPGPAFRQSPAPAPPGFPPPPPRSGRSGRSL 1043 >gb|ABWE01000770.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont269.2, whole genome shotgun sequence Length = 28444 Score = 30.8 bits (68), Expect = 6.2 Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 1/86 (1%) Frame = -3 Query: 222 WIIPSELSMFTGYLSNNRFYPPPPKGKEVII-HRLLSMFHPRPFVKTRFAPQGAVACLTA 280 W + S+F LSN + PP + E+++ HR L +F P + R + + + +T Sbjct: 12758 WFLLHLCSLFVSDLSNRKIERPPGRFYEILLYHRDLQIFLPLRPYRLRLSVKTSKCLMTL 12579 Query: 281 ISDFYYTVMFRIHAEFQLSEPPDFPF 306 I Y M + EFQ +F F Sbjct: 12578 IMTRY---MQHLLNEFQAL*KANFAF 12510 >gb|ABWE01004483.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont3579.1, whole genome shotgun sequence Length = 1043 Score = 30.4 bits (67), Expect = 8.1 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = -3 Query: 5 RPGQRGPPSPGPAAQPPAPPRRRARS 30 R G R PP+P P PP RR++R+ Sbjct: 690 RAGGRHPPTPAPCCPPPCRHRRQSRT 613 >gb|ABWE01000137.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont42.11, whole genome shotgun sequence Length = 71581 Score = 30.4 bits (67), Expect = 8.1 Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 4/68 (5%) Frame = +3 Query: 10 GPPSPGPAAQPPAPPRRRARSLALLGALLAAAAAAAVRVCARHAEAQAAA----RQELAL 65 GPP PAA P R R R + L +A AA + A HA+A++AA R + Sbjct: 47985 GPPDEKPAA-PRTHERARPRRVPL---CVARAARCTLAAAAPHADARSAATSAGRSAEGV 48152 Query: 66 KTLGTDGL 73 + G GL Sbjct: 48153 RASGAQGL 48176 >gb|ABWE01000124.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont29.18, whole genome shotgun sequence Length = 74557 Score = 30.4 bits (67), Expect = 8.1 Identities = 33/120 (27%), Positives = 44/120 (36%) Frame = -3 Query: 11 PPSPGPAAQPPAPPRRRARSLALLGALLAAAAAAAVRVCARHAEAQAAARQELALKTLGT 70 PP P P PP PP RS L LL + + A A AAR T Sbjct: 33284 PPPPPPPCPPPPPP---FRSSKL*SMLLILPSPLRLLPSAVLVLALVAARVPTVKSTRPI 33114 Query: 71 DGLFLFSSLDTDGDMYISPEEFKPIAEKLTGSCSVTQTGVQWCSHSSLQPQLPWLNUSSC 130 + S D +G ++ E FK + E +G+QW S ++ Q L C Sbjct: 33113 RRMIRIS--DQEGRQWLLTEYFKMVTE--------DYSGMQWKSVPTVATQHAPLCTEKC 32964 Database: H.arabidopsidis/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 67,459,135 Number of sequences in database: 5422 Lambda K H 0.318 0.134 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,633,472 Number of Sequences: 5422 Number of extensions: 866407 Number of successful extensions: 5402 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 755 Number of HSP's successfully gapped in prelim test: 264 Number of HSP's that attempted gapping in prelim test: 3926 Number of HSP's gapped (non-prelim): 2482 length of query: 590 length of database: 22,486,378 effective HSP length: 111 effective length of query: 479 effective length of database: 21,884,536 effective search space: 10482692744 effective search space used: 10482692744 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 66 (30.0 bits)