TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000018_1.0 # Protein # Selenoprotein N (SelN) # Homo
sapiens # Complete
         (590 letters)

Database: C.parvum/genome.fa 
           8 sequences; 9,102,324 total letters

Searching........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000431.1| Cryptosporidium parvum Iowa II chromosome 3, whol...    32   0.52 
gb|CM000434.1| Cryptosporidium parvum Iowa II chromosome 6, whol...    29   3.4  
gb|CM000432.1| Cryptosporidium parvum Iowa II chromosome 4, whol...    28   5.8  
gb|CM000436.1| Cryptosporidium parvum Iowa II chromosome 8, whol...    28   7.5  

>gb|CM000431.1| Cryptosporidium parvum Iowa II chromosome 3, whole genome shotgun
              sequence
          Length = 1099352

 Score = 31.6 bits (70), Expect = 0.52
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = -2

Query: 472    VLESSPILTLLNESFISTWSLVKELEELQNNQENS 506
              +L + P  TLL  SF   WS   EL   QNN++NS
Sbjct: 681067 ILSNKPSPTLLIRSFALRWSSTFELAYYQNNKKNS 680963



 Score = 27.7 bits (60), Expect = 7.5
 Identities = 15/76 (19%), Positives = 34/76 (44%)
 Frame = -1

Query: 510    KLAGLHLEKYSFPVEMMICLPNGTVVHHINANYFLDITSVKPEEIESNLFSFSSTFEDPS 569
              ++ GL L K  FP  +M+C+   ++           ++++K   + +NL +F   F   S
Sbjct: 432899 EIKGLTLSKLKFPFGLMVCIKRLSI----------KVSTLK*LHVNTNLNTFLEIFSSNS 432750

Query: 570    TATYMQFLKEGLRRGL 585
                 ++    + + + L
Sbjct: 432749 VKFFLILFSDSVSKSL 432702


>gb|CM000434.1| Cryptosporidium parvum Iowa II chromosome 6, whole genome shotgun sequence
          Length = 1332857

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 19/54 (35%), Positives = 22/54 (40%)
 Frame = +2

Query: 192     TAAASPSAVFATRHFQPFLPPPGQELGEPWWIIPSELSMFTGYLSNNRFYPPPP 245
               +A   P  V AT    PF       +GE  +  P   S   GY     FYPPPP
Sbjct: 1052015 SAGPRPPGVQATPQTSPFA------MGENPYSYPYSSSPGGGYYYYYNFYPPPP 1052158


>gb|CM000432.1| Cryptosporidium parvum Iowa II chromosome 4, whole genome shotgun
              sequence
          Length = 1104417

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +3

Query: 20     PPAPPRRRARSLALLG--ALLAAAAAAAVRVCA 50
              PP PP++R R    +   AL AAAAAAA    A
Sbjct: 397983 PPEPPKKRGRGRPRINREALAAAAAAAAANNAA 398081


>gb|CM000436.1| Cryptosporidium parvum Iowa II chromosome 8, whole genome shotgun
              sequence
          Length = 1344712

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 132    SLLRSTPAASCEEEELPPDPSEETLTIEA 160
              SLL S P   C+  +LPPD +   +T+++
Sbjct: 700929 SLLSSPPLLPCDPAKLPPDAAATLVTLDS 701015


  Database: C.parvum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 9,102,324
  Number of sequences in database:  8
  
Lambda     K      H
   0.318    0.134    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,562,391
Number of Sequences: 8
Number of extensions: 85479
Number of successful extensions: 659
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 615
Number of HSP's gapped (non-prelim): 126
length of query: 590
length of database: 3,034,108
effective HSP length: 97
effective length of query: 493
effective length of database: 3,033,332
effective search space: 1495432676
effective search space used: 1495432676
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)