TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000018_1.0 # Protein # Selenoprotein N (SelN) # Homo
sapiens # Complete
         (590 letters)

Database: C.muris/genome.fa 
           84 sequences; 9,245,251 total letters

Searching...................................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|DS989735.1| Cryptosporidium muris RN66 scf_1106632353989 geno...    31   0.69 
gb|DS989733.1| Cryptosporidium muris RN66 scf_1106632373425 geno...    29   3.4  
gb|DS989728.1| Cryptosporidium muris RN66 scf_1106632373407 geno...    28   7.6  
gb|DS989727.1| Cryptosporidium muris RN66 scf_1106632353999 geno...    28   7.6  

>gb|DS989735.1| Cryptosporidium muris RN66 scf_1106632353989 genomic scaffold, whole
              genome shotgun sequence
          Length = 378465

 Score = 31.2 bits (69), Expect = 0.69
 Identities = 34/127 (26%), Positives = 57/127 (44%), Gaps = 3/127 (2%)
 Frame = +1

Query: 435    EAFDRAKAENK-LVHSILLWGALDDQSCUGSGRTLRETVLESSPILTLLNESFISTWSLV 493
              E F   K ENK L    LL+  +D+        TL +     SP+LT+  ++FI  +  +
Sbjct: 306565 ENFSEYKYENKKLKVDPLLYNKIDNI-------TLIKNNSLDSPLLTIYQDNFIKIYGQI 306723

Query: 494    KELEELQNNQENSSHQKLAGLHLEKYSFPVEMMICLPNGTVVHH--INANYFLDITSVKP 551
              KEL       +N +   L  +    +S  +  M     GT++     N  +F+ I SVK 
Sbjct: 306724 KELILYNLINQNENFSTLDTVSKWLWSDSIGFMY---TGTILESDISNKEFFVKIYSVKI 306894

Query: 552    EEIESNL 558
              + + ++L
Sbjct: 306895 DIMNNSL 306915


>gb|DS989733.1| Cryptosporidium muris RN66 scf_1106632373425 genomic scaffold, whole
              genome shotgun sequence
          Length = 528544

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = +1

Query: 472    VLESSPILTLLNESFISTWSLVKELEELQNNQENSSHQKLAGLHLEKYS 520
              V ES P L+ + +++I++        ++  NQEN +  +L  LH  KYS
Sbjct: 345583 VYESIPGLSRIQKNYINS-------SQIHKNQENFNSTELYSLHTPKYS 345708


>gb|DS989728.1| Cryptosporidium muris RN66 scf_1106632373407 genomic scaffold, whole
              genome shotgun sequence
          Length = 965821

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +2

Query: 11     PPSPGPAAQPPAPP 24
              PPSP P+  PP+PP
Sbjct: 149366 PPSPSPSPPPPSPP 149407


>gb|DS989727.1| Cryptosporidium muris RN66 scf_1106632353999 genomic scaffold, whole genome
               shotgun sequence
          Length = 1306717

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -3

Query: 537     HINANYFLDITSVKPEEIESNLFSFSSTFEDPSTATYMQF 576
               +I  N  LD+TS+    IE  + + S  F  PST+ +  F
Sbjct: 1086209 NILINSILDVTSITSSLIELVILNSSHIFSSPSTSCFSLF 1086090


  Database: C.muris/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 9,245,251
  Number of sequences in database:  84
  
Lambda     K      H
   0.318    0.134    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,264,583
Number of Sequences: 84
Number of extensions: 76102
Number of successful extensions: 391
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 359
Number of HSP's gapped (non-prelim): 140
length of query: 590
length of database: 3,081,750
effective HSP length: 97
effective length of query: 493
effective length of database: 3,073,602
effective search space: 1515285786
effective search space used: 1515285786
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)