TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000018_1.0 # Protein # Selenoprotein N (SelN) # Homo sapiens # Complete (590 letters) Database: C.merolae/genome.fa 20 sequences; 16,546,747 total letters Searching....................done Score E Sequences producing significant alignments: (bits) Value dbj|AP006502.2| Cyanidioschyzon merolae DNA, chromosome 20, comp... 36 0.050 dbj|AP006499.2| Cyanidioschyzon merolae DNA, chromosome 17, comp... 34 0.19 dbj|AP006498.2| Cyanidioschyzon merolae DNA, chromosome 16, comp... 32 0.72 dbj|AP006491.2| Cyanidioschyzon merolae DNA, chromosome 9, compl... 32 0.94 dbj|AP006493.2| Cyanidioschyzon merolae DNA, chromosome 11, comp... 32 0.94 dbj|AP006483.2| Cyanidioschyzon merolae DNA, chromosome 1, compl... 31 1.2 dbj|AP006489.2| Cyanidioschyzon merolae DNA, chromosome 7, compl... 30 2.1 dbj|AP006497.2| Cyanidioschyzon merolae DNA, chromosome 15, comp... 30 2.1 dbj|AP006488.2| Cyanidioschyzon merolae DNA, chromosome 6, compl... 30 3.6 dbj|AP006490.2| Cyanidioschyzon merolae DNA, chromosome 8, compl... 30 3.6 dbj|AP006495.2| Cyanidioschyzon merolae DNA, chromosome 13, comp... 29 4.7 dbj|AP006500.2| Cyanidioschyzon merolae DNA, chromosome 18, comp... 29 4.7 dbj|AP006494.2| Cyanidioschyzon merolae DNA, chromosome 12, comp... 29 6.1 >dbj|AP006502.2| Cyanidioschyzon merolae DNA, chromosome 20, complete genome, complete sequence Length = 1621617 Score = 35.8 bits (81), Expect = 0.050 Identities = 23/60 (38%), Positives = 28/60 (46%) Frame = +3 Query: 1 MGRARPGQRGPPSPGPAAQPPAPPRRRARSLALLGALLAAAAAAAVRVCARHAEAQAAAR 60 M RA PG P +P A++ A P +R +A LAAAAAAA A A R Sbjct: 495759 MPRAAPGAAHPGAPAAASRRGARPAAASRGIAAGETALAAAAAAAATAATAVAVVNVARR 495938 >dbj|AP006499.2| Cyanidioschyzon merolae DNA, chromosome 17, complete genome, complete sequence Length = 1232258 Score = 33.9 bits (76), Expect = 0.19 Identities = 21/63 (33%), Positives = 34/63 (53%) Frame = +2 Query: 10 GPPSPGPAAQPPAPPRRRARSLALLGALLAAAAAAAVRVCARHAEAQAAARQELALKTLG 69 G PGP+ QP ++ L+ A+L ++ A +VR C R A ++ A+Q + LG Sbjct: 140753 GSAFPGPSRQPSELFQQ------LVQAVLESSTARSVRTCTRAALFKSTAKQGASSTRLG 140914 Query: 70 TDG 72 T+G Sbjct: 140915 TNG 140923 >dbj|AP006498.2| Cyanidioschyzon merolae DNA, chromosome 16, complete genome, complete sequence Length = 908485 Score = 32.0 bits (71), Expect = 0.72 Identities = 32/93 (34%), Positives = 42/93 (45%), Gaps = 15/93 (16%) Frame = -1 Query: 13 SPGPAAQPPAPPRRR--------ARSLALLGALLAAAAAAAVRV-CARHAEA-QAAARQE 62 +P P Q P P RR A ++ + G++ A A R+ C R +EA AR E Sbjct: 99646 APAPVVQRPCPDHRRPAVAAARSAVAIRVCGSVTATGMVLAFRLTCLRSSEALLIRARCE 99467 Query: 63 L----ALKTLGTDGLFLFSSLDTD-GDMYISPE 90 L AL D L LF S TD G ++PE Sbjct: 99466 LSGKPALPVHDLDSL*LFQSGTTDQGPAAVAPE 99368 Score = 32.0 bits (71), Expect = 0.72 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 2/59 (3%) Frame = -3 Query: 2 GRARPGQRGPPSPGPAAQPPAPPRRRARSLALLGALLAAAAAAA--VRVCARHAEAQAA 58 GRA G SP +PP P R + +G +L AAAAAA ++V H+ A ++ Sbjct: 18293 GRAVLRH*GAASPAGGTRPPRRPPRAYHGICAVGIILWAAAAAATSLQVAKDHSGATSS 18117 Score = 28.5 bits (62), Expect = 7.9 Identities = 18/51 (35%), Positives = 21/51 (41%) Frame = -3 Query: 5 RPGQRGPPSPGPAAQPPAPPRRRARSLALLGALLAAAAAAAVRVCARHAEA 55 R P +P AQP S+ + GALL A A A R RH A Sbjct: 506903 RTAMHSPHAPPSQAQPRVQASSIPNSIHVAGALLRGAYANAGRKTLRHTPA 506751 >dbj|AP006491.2| Cyanidioschyzon merolae DNA, chromosome 9, complete genome, complete sequence Length = 810151 Score = 31.6 bits (70), Expect = 0.94 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 2/69 (2%) Frame = -3 Query: 6 PGQRGPPSPG--PAAQPPAPPRRRARSLALLGALLAAAAAAAVRVCARHAEAQAAARQEL 63 P + PP+P PAA PAP R +R + L ++ ++ R R A+ +A + Sbjct: 155144 PRRPQPPTPPNKPAAIFPAPSARHSRRVLPLDSVTSSTKVMVNRDSKRPMNARPSAVLRM 154965 Query: 64 ALKTLGTDG 72 A+ G DG Sbjct: 154964 AIHASGVDG 154938 Score = 29.6 bits (65), Expect = 3.6 Identities = 21/46 (45%), Positives = 25/46 (54%) Frame = -2 Query: 28 ARSLALLGALLAAAAAAAVRVCARHAEAQAAARQELALKTLGTDGL 73 A +L GA AAAAAAAV VCA A AA+R L +D + Sbjct: 81441 AEALRCTGAA-AAAAAAAVVVCAVDDTAGAASRTSRPLHAASSDAI 81307 Score = 28.5 bits (62), Expect = 7.9 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 5/61 (8%) Frame = -3 Query: 17 AAQPPAPPRRRARSLALLGALLAAAAAAAVRVCAR-----HAEAQAAARQELALKTLGTD 71 A PP PP R A + A AAAAAA R +R +AE+ A+R++ + G++ Sbjct: 702758 ALPPPPPPSRDAAAAA------AAAAAAVSRALSRRGICDYAESTRASRRD-RCRAAGSE 702600 Query: 72 G 72 G Sbjct: 702599 G 702597 >dbj|AP006493.2| Cyanidioschyzon merolae DNA, chromosome 11, complete genome, complete sequence Length = 852849 Score = 31.6 bits (70), Expect = 0.94 Identities = 18/48 (37%), Positives = 26/48 (54%) Frame = +1 Query: 10 GPPSPGPAAQPPAPPRRRARSLALLGALLAAAAAAAVRVCARHAEAQA 57 GP + G A + P+R R L AL+A A +A+ +CA A A+A Sbjct: 319948 GPDADGGATRHAGRPQRPRRCLGAGDALIARATSASRAICAYLATARA 320091 Score = 29.3 bits (64), Expect = 4.7 Identities = 24/84 (28%), Positives = 32/84 (38%), Gaps = 10/84 (11%) Frame = +1 Query: 1 MGRARPGQRGPPSPGPAAQPPAPPRRRARSLALLGALLAAAAAAAVRVC----------A 50 MGR P R P A P+PP + ++ A AAAA + C Sbjct: 781558 MGRVEPLARPMAPATPPAAVPSPP----NGVVVVAAAAAAAAVFGGKCC*CRIANRSLLG 781725 Query: 51 RHAEAQAAARQELALKTLGTDGLF 74 HA A +R E + + GT F Sbjct: 781726 SHANASTLSRSENSSVSTGTSFSF 781797 Score = 28.9 bits (63), Expect = 6.1 Identities = 15/41 (36%), Positives = 22/41 (53%) Frame = +2 Query: 29 RSLALLGALLAAAAAAAVRVCARHAEAQAAARQELALKTLG 69 +S L +AAAA+ +VCARH A + R E + +G Sbjct: 257393 KSRILRQGAVAAAASTLFQVCARHCGATRSVRTEQRQRLIG 257515 >dbj|AP006483.2| Cyanidioschyzon merolae DNA, chromosome 1, complete genome, complete sequence Length = 422616 Score = 31.2 bits (69), Expect = 1.2 Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 2/57 (3%) Frame = +3 Query: 3 RARPGQRGPPSPGPAAQPPAPPRRRARSLALLGALLAAAAAA--AVRVCARHAEAQA 57 RAR +RGPP A+ RRRAR+ ++ +AA+A+ A+R+ AR +A A Sbjct: 60414 RARARRRGPPERD--AREQQQQRRRARARRIITPSIAASASCRQALRLRARSYDAHA 60578 Score = 30.8 bits (68), Expect = 1.6 Identities = 27/77 (35%), Positives = 37/77 (48%), Gaps = 6/77 (7%) Frame = +3 Query: 9 RGPPSPG-PAAQPPAPPRRRARSLALLGALLAAAAAAAVRVCA-----RHAEAQAAARQE 62 RG +P P A+ A RRRARSL A A + + CA + A AAA Q Sbjct: 235317 RGCGAPAMPPARCAATIRRRARSLDAPARRSAEACGSRTQRCAIAHACSESAAAAAAEQA 235496 Query: 63 LALKTLGTDGLFLFSSL 79 ++ G +G+ L S+L Sbjct: 235497 RRVRLGGKNGVLLQSAL 235547 Score = 28.9 bits (63), Expect = 6.1 Identities = 11/22 (50%), Positives = 13/22 (59%) Frame = +3 Query: 4 ARPGQRGPPSPGPAAQPPAPPR 25 +RP R PP P +PP PPR Sbjct: 255318 SRPAARAPPRPPLPPRPPLPPR 255383 >dbj|AP006489.2| Cyanidioschyzon merolae DNA, chromosome 7, complete genome, complete sequence Length = 584452 Score = 30.4 bits (67), Expect = 2.1 Identities = 22/37 (59%), Positives = 24/37 (64%), Gaps = 2/37 (5%) Frame = -1 Query: 25 RRRARSL--ALLGALLAAAAAAAVRVCARHAEAQAAA 59 RRRAR L A LG LL AAAAAA V + H +A AA Sbjct: 558142 RRRARHLLVASLGRLLRAAAAAAAAV-SSHLDASLAA 558035 >dbj|AP006497.2| Cyanidioschyzon merolae DNA, chromosome 15, complete genome, complete sequence Length = 902900 Score = 30.4 bits (67), Expect = 2.1 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Frame = -3 Query: 268 RFAPQGAVACLTAISDFYYTVMF---RIHAEFQLSEPPDFPFWFSPAQFTGHIIL 319 RF G A A+ D +V F FQ+ P FW P+QF+G +++ Sbjct: 403452 RFLVSGVGAYGGAVEDLIESVAFINPSFDTSFQVLRFPTVAFWCQPSQFSGSLLI 403288 Score = 29.3 bits (64), Expect = 4.7 Identities = 11/19 (57%), Positives = 12/19 (63%) Frame = +2 Query: 6 PGQRGPPSPGPAAQPPAPP 24 P PP+P P A PPAPP Sbjct: 896690 PAPAPPPAPPPPAPPPAPP 896746 >dbj|AP006488.2| Cyanidioschyzon merolae DNA, chromosome 6, complete genome, complete sequence Length = 536163 Score = 29.6 bits (65), Expect = 3.6 Identities = 21/59 (35%), Positives = 29/59 (49%) Frame = -2 Query: 379 LDEDGSMIDSHLPSGEPLQFVFEEIKWQQELSWEEAARRLEVAMYPFKKVSYLPFTEAF 437 LD DG+ +H PS P Q F E WQQ++S R +VA P + L ++F Sbjct: 233831 LDGDGACSRAHCPSYAPNQLNFRE-AWQQDMS------RCKVA*TPLLQRQRLQVLQSF 233676 Score = 29.6 bits (65), Expect = 3.6 Identities = 23/60 (38%), Positives = 27/60 (45%), Gaps = 1/60 (1%) Frame = -1 Query: 13 SPGPAAQPPAPPRRRARSLAL-LGALLAAAAAAAVRVCARHAEAQAAARQELALKTLGTD 71 SP A+ R RS+ L A AAAAAAA R A A +R + AL TD Sbjct: 135297 SPASASAGVVESARGLRSIPLDAAAAAAAAAAAAAAAFPRAPSASAVSRCKAALSAAQTD 135118 >dbj|AP006490.2| Cyanidioschyzon merolae DNA, chromosome 8, complete genome, complete sequence Length = 739753 Score = 29.6 bits (65), Expect = 3.6 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 2/69 (2%) Frame = +3 Query: 6 PGQRGPPSPG--PAAQPPAPPRRRARSLALLGALLAAAAAAAVRVCARHAEAQAAARQEL 63 P + PP+P PAA PAP R +R + ++ ++ R R A+ +A + Sbjct: 585294 PRRPQPPTPPNKPAAIFPAPSARHSRRVLPRDSVTSSTKVMVKRDSKRPMNARPSAVLRM 585473 Query: 64 ALKTLGTDG 72 A+ G DG Sbjct: 585474 AIHASGVDG 585500 >dbj|AP006495.2| Cyanidioschyzon merolae DNA, chromosome 13, complete genome, complete sequence Length = 866983 Score = 29.3 bits (64), Expect = 4.7 Identities = 20/46 (43%), Positives = 25/46 (54%) Frame = -3 Query: 16 PAAQPPAPPRRRARSLALLGALLAAAAAAAVRVCARHAEAQAAARQ 61 PAA P P R +L+ A + AAAA+ R A HA A+A RQ Sbjct: 756803 PAAAPVTPITRARHRRSLVCATIR*AAAASTRKVA-HAAARALIRQ 756669 Score = 28.9 bits (63), Expect = 6.1 Identities = 17/38 (44%), Positives = 19/38 (50%) Frame = -1 Query: 20 PPAPPRRRARSLALLGALLAAAAAAAVRVCARHAEAQA 57 PPAP + A A AAAAAAA AR A +A Sbjct: 169450 PPAPDDPGVPAAAAAAAAAAAAAAAAAAAAARSARLRA 169337 >dbj|AP006500.2| Cyanidioschyzon merolae DNA, chromosome 18, complete genome, complete sequence Length = 1253087 Score = 29.3 bits (64), Expect = 4.7 Identities = 13/22 (59%), Positives = 17/22 (77%), Gaps = 1/22 (4%) Frame = -2 Query: 8 QRGP-PSPGPAAQPPAPPRRRA 28 ++GP PSPG A +PP+ PRR A Sbjct: 184726 RKGPEPSPGSARRPPSAPRRPA 184661 >dbj|AP006494.2| Cyanidioschyzon merolae DNA, chromosome 12, complete genome, complete sequence Length = 859119 Score = 28.9 bits (63), Expect = 6.1 Identities = 19/51 (37%), Positives = 22/51 (43%) Frame = +1 Query: 11 PPSPGPAAQPPAPPRRRARSLALLGALLAAAAAAAVRVCARHAEAQAAARQ 61 P PG PP PP RR + L LLA A R + A +ARQ Sbjct: 291853 PLEPGG*RPPPEPPVRR*SRIDLQSELLARLAKGPPRKSSTVAGVYGSARQ 292005 Score = 28.5 bits (62), Expect = 7.9 Identities = 24/59 (40%), Positives = 29/59 (49%), Gaps = 1/59 (1%) Frame = -3 Query: 2 GRARPGQRGPPSPGPAAQPPAPPRRRARSLALLGALLAAAAAAAVRV-CARHAEAQAAA 59 GR+ G P+ PA R A + A AAAAAAA+RV CAR + A AA Sbjct: 339400 GRSLAALLG*TPAAPSLPEPATVERPAGA----AAAAAAAAAAALRVPCARASAAAIAA 339236 Database: C.merolae/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 16,546,747 Number of sequences in database: 20 Lambda K H 0.318 0.134 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 13,927,674 Number of Sequences: 20 Number of extensions: 275111 Number of successful extensions: 3081 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 16 Number of HSP's that attempted gapping in prelim test: 2412 Number of HSP's gapped (non-prelim): 1872 length of query: 590 length of database: 5,515,582 effective HSP length: 101 effective length of query: 489 effective length of database: 5,513,562 effective search space: 2696131818 effective search space used: 2696131818 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 61 (28.1 bits)