TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP12000018_1.0 gi|287325231|ref|NP_001004294.4| selenoprotein
N [Danio rerio]
         (557 letters)

Database: T.trahens/genome.fa 
           131 sequences; 28,680,627 total letters

Searching.................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL349442.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    33   0.40 
gb|GL349436.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    32   1.5  
gb|GL349468.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    31   2.0  
gb|GL349453.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    31   2.6  
gb|GL349525.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    30   4.4  
gb|GL349457.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    30   4.4  
gb|GL349443.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    29   7.5  
gb|GL349439.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    29   9.7  

>gb|GL349442.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.10,
             whole genome shotgun sequence
          Length = 578410

 Score = 33.5 bits (75), Expect = 0.40
 Identities = 26/101 (25%), Positives = 40/101 (39%), Gaps = 4/101 (3%)
 Frame = +3

Query: 90    SPEEFKPIAEKLTGVAPPPEYEEEIPHDPNGETLTLHAKMQPLLLESMTKSKDGFLGVSH 149
             SP    P   + T  APPP     +PH       + H  ++P+++       D   G +H
Sbjct: 19062 SPPLTPPPNRQRTSPAPPPTSHVPLPH-------STHHVVEPVIIRVAVIVADPLAGAAH 19220

Query: 150   S----SLSGLRSWKRPAISSSTFYASQFKVFLPPSGKSAVG 186
             S    +L G R WK            +  +  P SG++A G
Sbjct: 19221 SVGVRALRGWRGWKGRGAGVVGAERPRAWLQAPSSGRTASG 19343


>gb|GL349436.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.4,
              whole genome shotgun sequence
          Length = 664084

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 30/117 (25%), Positives = 48/117 (41%), Gaps = 21/117 (17%)
 Frame = +1

Query: 118    PNGETLTLHAKMQPLLLESMTKSKDGFLGVSHSSLS--------------GLRSWKRPAI 163
              P+  T  +H + QPLL  S++ +     G   ++LS               + SW +P  
Sbjct: 309955 PSSATPGVHTQ-QPLLPLSLSLTLHVHCGAPKNALSFFTPSGSFATAASAPVSSWTQPTR 310131

Query: 164    SSSTF-------YASQFKVFLPPSGKSAVGDTWWIIPSELNIFTGYLPNNRFHPPTP 213
              SSSTF        A Q +  LPP        +W ++P   +     LP + + P +P
Sbjct: 310132 SSSTF*IPWSSPPAVQCRHRLPPRCSRLSWPSWLLLPGRRSSSPRSLPRSAWQPTSP 310302


>gb|GL349468.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.36,
              whole genome shotgun sequence
          Length = 367059

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -3

Query: 393    FKKVPYLPFSEAFSRASAEK-KLVHSILLWGALD 425
              ++KV   PF E F RASAE   L+ ++L W  LD
Sbjct: 190216 YRKVERKPFGELFPRASAEAIDLLETLLQWNPLD 190115


>gb|GL349453.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.21,
              whole genome shotgun sequence
          Length = 472482

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 218    VLIHSLLSMFHPRPFVKSRFAPQGAVACIRATSDFY 253
              +L  S  +   PR + +SR  P   ++C+RAT+  Y
Sbjct: 375652 ILARSAAAKASPRGYTESRMGPNAGMSCVRATATAY 375759


>gb|GL349525.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold
           supercont1.93, whole genome shotgun sequence
          Length = 9696

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +3

Query: 331 PQMELGAEGPSTPSVIYDEQGNMIDSRG 358
           PQ E  AE   TP + YDE GN++D+ G
Sbjct: 267 PQPEPAAE--ETPMLYYDEAGNLVDAEG 344


>gb|GL349457.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.25,
             whole genome shotgun sequence
          Length = 436284

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 34/134 (25%), Positives = 51/134 (38%), Gaps = 5/134 (3%)
 Frame = -3

Query: 85    HDLYLSPEE--FKPIAEKLTGVAPPPEYEEEIPHDPNGETLTLHAKMQPL---LLESMTK 139
             H L  SP+     P+ E L  V+PP  +   IPH P      L+  + P    L  S  +
Sbjct: 42886 HLLRCSPKHHIIGPL*ESLPSVSPPNFFHPPIPHPPTPPLSVLYLPLPPS*PPLAHSSGR 42707

Query: 140   SKDGFLGVSHSSLSGLRSWKRPAISSSTFYASQFKVFLPPSGKSAVGDTWWIIPSELNIF 199
             S        H S + L S +     +     S+F   LPP   S+           ++  
Sbjct: 42706 SLSPRYLSYHLSPASL-SIQPKQNQTLNLCISKFSALLPPLPSSS--------QRSISPI 42554

Query: 200   TGYLPNNRFHPPTP 213
               + P++R  PP P
Sbjct: 42553 IRFAPHHRPPPPPP 42512


>gb|GL349443.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.11,
              whole genome shotgun sequence
          Length = 571036

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 10/60 (16%)
 Frame = +2

Query: 407    RASAEKKLVHSILLWGALDDQSCUGSGRTLRETVLESSPVL----------ALLNQSFIS 456
              RAS   +     LLWGALDD +  G     RE  L  SP +           LL+Q +IS
Sbjct: 171485 RASGNCRT*AQGLLWGALDDAARHGGRLPHREAGLRRSPAVPAERRAILMGPLLHQHYIS 171664


>gb|GL349439.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.7,
              whole genome shotgun sequence
          Length = 618594

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 33/136 (24%), Positives = 50/136 (36%), Gaps = 8/136 (5%)
 Frame = +1

Query: 118    PNGETLTLHAKMQPLLLESMTKSKDGFLGVSHSSLSGLRSWKRPAISSSTFYASQFKVFL 177
              P+G T +L  K  P L+ S T+++      +  S S   S  RP            +  L
Sbjct: 254080 PSGSTTSLSLK--PALIPSGTRTRSPHTSQTLRSPSSSSSRCRPQALLPPLRPCSVRGLL 254253

Query: 178    PPSGKSAVGDTWWIIPSELNIFTGYLPNN--------RFHPPTPRGKEVLIHSLLSMFHP 229
              PP   S+      I PS +   + +LP          R   P PR +  L  +  +   P
Sbjct: 254254 PPGTSSSTASRSPIAPSAVTWTSFWLPPQTSPLAPACRSRRPRPRSRSPLSSTRPASARP 254433

Query: 230    RPFVKSRFAPQGAVAC 245
              R    +R  P   + C
Sbjct: 254434 R---ATRTRPSPLLIC 254472


  Database: T.trahens/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 28,680,627
  Number of sequences in database:  131
  
Lambda     K      H
   0.318    0.136    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,904,127
Number of Sequences: 131
Number of extensions: 494177
Number of successful extensions: 2478
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 2306
Number of HSP's gapped (non-prelim): 573
length of query: 557
length of database: 9,560,209
effective HSP length: 105
effective length of query: 452
effective length of database: 9,546,454
effective search space: 4314997208
effective search space used: 4314997208
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)