TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP12000018_1.0 gi|287325231|ref|NP_001004294.4| selenoprotein
N [Danio rerio]
         (557 letters)

Database: S.parasitica/genome.fa 
           1445 sequences; 53,132,636 total letters

Searching...................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GG743961.1| Saprolegnia parasitica CBS 223.65 genomic scaffol...    31   3.6  
gb|GG744022.1| Saprolegnia parasitica CBS 223.65 genomic scaffol...    31   4.7  
gb|GG743931.1| Saprolegnia parasitica CBS 223.65 genomic scaffol...    30   6.1  
gb|GG743917.1| Saprolegnia parasitica CBS 223.65 genomic scaffol...    30   8.0  

>gb|GG743961.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.79, whole
              genome shotgun sequence
          Length = 180961

 Score = 31.2 bits (69), Expect = 3.6
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = -1

Query: 163    ISSSTFYASQFKVFLPPSGKSAVGDTWWIIPSELNIFTGYLPNNRFH 209
              ++SS      ++++LPP     V DTWW I     +F       R H
Sbjct: 169462 LASSHLRQLLYRIWLPPLAPYLVVDTWWAIARRAAVFRQPASRTRLH 169322


>gb|GG744022.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.140,
             whole genome shotgun sequence
          Length = 131932

 Score = 30.8 bits (68), Expect = 4.7
 Identities = 17/31 (54%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +1

Query: 2     ATDVDKTPAGEQKDDHEDRGTPSSR-RGRSR 31
             AT++D  PA  Q DDH  R  PSS  RGR R
Sbjct: 81775 ATELDAEPACVQHDDHARRPAPSSADRGRRR 81867


>gb|GG743931.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.49, whole
              genome shotgun sequence
          Length = 259822

 Score = 30.4 bits (67), Expect = 6.1
 Identities = 29/97 (29%), Positives = 41/97 (42%), Gaps = 14/97 (14%)
 Frame = +1

Query: 104    VAPPPEYEEEIPHDPNGETLTL--HAKMQPLLLESMTKSKDGFL------------GVSH 149
              VAPPP  ++     P  E +++   AK  PL  + M  S+   L                
Sbjct: 190015 VAPPPTSKKLAGEPPKSEMMSIVAMAKPAPLTRQPMLPSRPM*LRSYAEASTSRGSSCVL 190194

Query: 150    SSLSGLRSWKRPAISSSTFYASQFKVFLPPSGKSAVG 186
              S L+ +  W+  A+SS    ASQ   +  PSG SA G
Sbjct: 190195 SRLAKMSLWRNDALSSKLILASQ--AYTLPSGVSANG 190299


>gb|GG743917.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.35, whole
              genome shotgun sequence
          Length = 346584

 Score = 30.0 bits (66), Expect = 8.0
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = -1

Query: 204    PNNRFHPPTPRGKEVLIHSLLSMFHPRPFVKSRFAPQGAVAC 245
              P++R +PP PR + +L HS++    PR   ++R    GA +C
Sbjct: 269424 PSSRPYPPRPRPRFLLKHSVVEAHQPRVGARAR----GASSC 269311


  Database: S.parasitica/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 53,132,636
  Number of sequences in database:  1445
  
Lambda     K      H
   0.318    0.136    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,737,115
Number of Sequences: 1445
Number of extensions: 633951
Number of successful extensions: 3219
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 2430
Number of HSP's gapped (non-prelim): 1458
length of query: 557
length of database: 17,710,878
effective HSP length: 109
effective length of query: 448
effective length of database: 17,553,373
effective search space: 7863911104
effective search space used: 7863911104
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)