TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP12000018_1.0 gi|287325231|ref|NP_001004294.4| selenoprotein
N [Danio rerio]
         (557 letters)

Database: P.ultimum/genome.fa 
           82 sequences; 42,801,618 total letters

Searching.................................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL376590.1| Pythium ultimum DAOM BR144 unplaced genomic scaff...    36   0.12 
gb|GL376620.1| Pythium ultimum DAOM BR144 unplaced genomic scaff...    30   5.0  
gb|GL376585.1| Pythium ultimum DAOM BR144 unplaced genomic scaff...    30   6.5  

>gb|GL376590.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875581868,
             whole genome shotgun sequence
          Length = 538251

 Score = 35.8 bits (81), Expect = 0.12
 Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 4/100 (4%)
 Frame = +1

Query: 271   DFPFWFTPGQF---AGHIILSKDASHVRDFHIYVPNDKTLNVDMEWLYGASETSNMEVDI 327
             D P W T G F   AG  ++++ +S   +FHIY+ +       +  L  AS +S     +
Sbjct: 51262 DVPKWITDGGFSLLAGESVVAQSSSSKLEFHIYIKSVAAEFFTVPSLSDASSSSGAFYIL 51441

Query: 328   GYLPQ-MELGAEGPSTPSVIYDEQGNMIDSRGEGGEPIQF 366
             G  P  +E    G S+ S   +  G +  S     EP  F
Sbjct: 51442 GAYPSPLEYFLHGASSSSFEINNSGEL--SLSSSAEPFDF 51555


>gb|GL376620.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582023,
               whole genome shotgun sequence
          Length = 1683196

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 17/60 (28%), Positives = 26/60 (43%)
 Frame = +3

Query: 75      LFFFSSLDTDHDLYLSPEEFKPIAEKLTGVAPPPEYEEEIPHDPNGETLTLHAKMQPLLL 134
               +FF + L+ DH L L P E + I +   G   P       P +P    L++    Q  L+
Sbjct: 1049046 VFFLARLEVDHPLVLGPREPQEIGDDFAGKVQPIPCFLARPAEPRPRLLSIERGAQERLV 1049225


>gb|GL376585.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875581789,
              whole genome shotgun sequence
          Length = 837833

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = +3

Query: 140    SKDGFLGVSHSSLSGLRSWKRPAISSSTFYASQFKVFLPPS 180
              SKDGF+ VS   + GLRSW     +   FY  Q  +F   S
Sbjct: 682971 SKDGFVSVSFLKMVGLRSWG----TRVRFYTQQQLIFTASS 683081


  Database: P.ultimum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 42,801,618
  Number of sequences in database:  82
  
Lambda     K      H
   0.318    0.136    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,129,225
Number of Sequences: 82
Number of extensions: 478453
Number of successful extensions: 2291
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2213
Number of HSP's gapped (non-prelim): 192
length of query: 557
length of database: 14,267,206
effective HSP length: 107
effective length of query: 450
effective length of database: 14,258,432
effective search space: 6416294400
effective search space used: 6416294400
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)