TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP12000018_1.0 gi|287325231|ref|NP_001004294.4| selenoprotein
N [Danio rerio]
         (557 letters)

Database: P.pallidum/genome.fa 
           42 sequences; 32,942,533 total letters

Searching..........................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL290996.1| Polysphondylium pallidum PN500 unplaced genomic s...    31   2.9  
gb|GL290983.1| Polysphondylium pallidum PN500 unplaced genomic s...    29   8.5  

>gb|GL290996.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold14,
              whole genome shotgun sequence
          Length = 1054919

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 7/103 (6%)
 Frame = +2

Query: 40     IIAAIPVISFCIKYYLDIQFVKRHEAGLKALGADGLFFFSSLDTDHDLYLSPEEFKPIAE 99
              + A+IPV S  +KY L    + +  A L A+    +     +  D  LY+S       + 
Sbjct: 882506 LTASIPVFSIIVKYNLLQTKLPKFGAILLAIFLPWIIVIPFMTGDRLLYISNYASLFFSS 882685

Query: 100    KLTGVAPPPEYEEEIPHDPNGETLTLHAK-------MQPLLLE 135
                  + P   Y + +    NG T+T H K       + P+LLE
Sbjct: 882686 ASNFIIPLLIYLKSVQFRKNGRTMTDHQKQILKEAGIDPILLE 882814


>gb|GL290983.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold1,
               whole genome shotgun sequence
          Length = 1995969

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = -1

Query: 87      LYLSPEEFKPIAEKLTGVAPPPEYEEEIPHDPNGETLTLHAKMQPLLLESMTKSKD 142
               L +SP + K +AE  TG     +  E   H  NG+TLT+ +  Q +     + S D
Sbjct: 1462827 LSISPNK-KKLAEDATGTREKIDIVESRTHQVNGKTLTIKSTKQKIDSSDSSDSSD 1462663


  Database: P.pallidum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 32,942,533
  Number of sequences in database:  42
  
Lambda     K      H
   0.318    0.136    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,986,807
Number of Sequences: 42
Number of extensions: 307152
Number of successful extensions: 1202
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1184
Number of HSP's gapped (non-prelim): 73
length of query: 557
length of database: 10,980,844
effective HSP length: 106
effective length of query: 451
effective length of database: 10,976,392
effective search space: 4950352792
effective search space used: 4950352792
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)