TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP12000018_1.0 gi|287325231|ref|NP_001004294.4| selenoprotein
N [Danio rerio]
         (557 letters)

Database: H.arabidopsidis/genome.fa 
           5422 sequences; 67,459,135 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABWE01000871.1| Hyaloperonospora parasitica strain Emoy2 v-7....    31   4.4  
gb|ABWE01000126.1| Hyaloperonospora parasitica strain Emoy2 v-7....    31   5.8  
gb|ABWE01000379.1| Hyaloperonospora parasitica strain Emoy2 v-7....    30   9.9  

>gb|ABWE01000871.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont94.13, whole
             genome shotgun sequence
          Length = 25246

 Score = 31.2 bits (69), Expect = 4.4
 Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 8/44 (18%)
 Frame = +1

Query: 137   MTKSKDGFLGVS--------HSSLSGLRSWKRPAISSSTFYASQ 172
             M KS++GF   S        HS+ +G+R W++P  S ST YAS+
Sbjct: 13366 MIKSQNGFARASLSPL*PESHSNNAGIRGWRKP--SRSTVYASR 13491


>gb|ABWE01000126.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont96.1, whole genome
             shotgun sequence
          Length = 74061

 Score = 30.8 bits (68), Expect = 5.8
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = -3

Query: 24    SSRRGRSRFTQISSLFIIAAIPVISFCIKYYLDIQFVKRHEAGLKALGADGLFFFSS 80
             + R G S +  I   F +A +  +   + Y+L ++   +     + +G DGLF  SS
Sbjct: 61765 ADRYGGSYYIHIHLAFSVAGVSAVLLSVYYHLQLERTDQRRCPSQFVGRDGLFLKSS 61595


>gb|ABWE01000379.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont36.3, whole genome
             shotgun sequence
          Length = 46217

 Score = 30.0 bits (66), Expect = 9.9
 Identities = 19/47 (40%), Positives = 26/47 (55%)
 Frame = +3

Query: 440   VLESSPVLALLNQSFISSWSLVKELEDLQGDVKNLELSEKARLHLEK 486
             +L  SP++ L N SF+  WS  ++  DLQ  V   +  EKAR   EK
Sbjct: 20220 MLACSPLIFLKNSSFMPKWSDDQDPLDLQFFVPQQKDLEKARTVSEK 20360


  Database: H.arabidopsidis/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 67,459,135
  Number of sequences in database:  5422
  
Lambda     K      H
   0.318    0.136    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,974,205
Number of Sequences: 5422
Number of extensions: 696020
Number of successful extensions: 2861
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 306
Number of HSP's successfully gapped in prelim test: 166
Number of HSP's that attempted gapping in prelim test: 2438
Number of HSP's gapped (non-prelim): 844
length of query: 557
length of database: 22,486,378
effective HSP length: 110
effective length of query: 447
effective length of database: 21,889,958
effective search space: 9784811226
effective search space used: 9784811226
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)