TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP12000018_1.0 gi|287325231|ref|NP_001004294.4| selenoprotein
N [Danio rerio]
         (557 letters)

Database: E.siliculosus/genome.fa 
           35 sequences; 195,934,119 total letters

Searching...................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|FN649760.1| Ectocarpus siliculosus strain Ec 32, whole genom...    34   2.0  
emb|FN649728.1| Ectocarpus siliculosus strain Ec 32, whole genom...    32   7.6  
emb|FN649751.1| Ectocarpus siliculosus strain Ec 32, whole genom...    32   7.6  
emb|FN649755.1| Ectocarpus siliculosus strain Ec 32, whole genom...    32   10.0 

>emb|FN649760.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence
               assembly, unassigned sequences LGUn
          Length = 58155991

 Score = 33.9 bits (76), Expect = 2.0
 Identities = 15/60 (25%), Positives = 31/60 (51%)
 Frame = +2

Query: 352     NMIDSRGEGGEPIQFVFEEIVWSEELKREEASRRLEVTMYPFKKVPYLPFSEAFSRASAE 411
               N++ + G+GG+ ++      VW   ++      R++ T +   + P+LPF+  FS  S +
Sbjct: 5329046 NLLSTEGQGGDVVR------VWQARVEGANIGHRVQSTKFHVTRRPFLPFAVLFSPVSTK 5329207


>emb|FN649728.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence
               assembly, chromosome LG03
          Length = 7313625

 Score = 32.0 bits (71), Expect = 7.6
 Identities = 20/63 (31%), Positives = 28/63 (44%)
 Frame = -3

Query: 155     LRSWKRPAISSSTFYASQFKVFLPPSGKSAVGDTWWIIPSELNIFTGYLPNNRFHPPTPR 214
               L  W+RP   SS+  A+   + + P+  + VG  W              P  R  PPTPR
Sbjct: 1698787 LPRWRRPRFPSSS-PAAPAPLSISPAAVATVGGDW--------------PRPRRQPPTPR 1698653

Query: 215     GKE 217
               G+E
Sbjct: 1698652 GRE 1698644


>emb|FN649751.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence
               assembly, chromosome LG26
          Length = 7107661

 Score = 32.0 bits (71), Expect = 7.6
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 275     WFTPGQFAGHIILSKDASHVRDFHI 299
               WF PG FAGH +     SH +  HI
Sbjct: 5364169 WFQPGTFAGHAVALLSGSHHKTIHI 5364243



 Score = 31.6 bits (70), Expect = 10.0
 Identities = 19/70 (27%), Positives = 29/70 (41%)
 Frame = -2

Query: 315     YGASETSNMEVDIGYLPQMELGAEGPSTPSVIYDEQGNMIDSRGEGGEPIQFVFEEIVWS 374
               +  ++  N     G LP   L   GP++P  +    GN I +RG   E        ++ S
Sbjct: 6541824 FTTTDACNFTFSDGQLPNFRLPEAGPNSPGDVQLNLGNNIITRGWVEEDESESISTLLES 6541645

Query: 375     EELKREEASR 384
                 +KRE   R
Sbjct: 6541644 RRIKRERKQR 6541615


>emb|FN649755.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence
               assembly, chromosome LG30
          Length = 4005922

 Score = 31.6 bits (70), Expect = 10.0
 Identities = 17/57 (29%), Positives = 30/57 (52%)
 Frame = -3

Query: 427     QSCUGSGRTLRETVLESSPVLALLNQSFISSWSLVKELEDLQGDVKNLELSEKARLH 483
               Q C    R+ R+ V  +  ++ ++++ F  SWS+    EDL    K+L   ++A LH
Sbjct: 1496027 QKCHEGCRSSRKYVRATKRIIFMISEGF--SWSVCGPAEDLLPQQKSLRTDDEASLH 1495863


  Database: E.siliculosus/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 195,934,119
  Number of sequences in database:  35
  
Lambda     K      H
   0.318    0.136    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 153,475,570
Number of Sequences: 35
Number of extensions: 2948774
Number of successful extensions: 14027
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 13512
Number of HSP's gapped (non-prelim): 2838
length of query: 557
length of database: 65,311,373
effective HSP length: 118
effective length of query: 439
effective length of database: 65,307,243
effective search space: 28669879677
effective search space used: 28669879677
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 70 (31.6 bits)