TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP12000018_1.0 gi|287325231|ref|NP_001004294.4| selenoprotein
N [Danio rerio]
         (557 letters)

Database: C.parvum/genome.fa 
           8 sequences; 9,102,324 total letters

Searching........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000429.1| Cryptosporidium parvum Iowa II chromosome 1, whol...    29   2.4  
gb|CM000436.1| Cryptosporidium parvum Iowa II chromosome 8, whol...    27   9.2  

>gb|CM000429.1| Cryptosporidium parvum Iowa II chromosome 1, whole genome shotgun
              sequence
          Length = 875659

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +2

Query: 216    KEVLIHSLLSMFHPRPFVKSRFAPQGAVACIRATSDF 252
              K+VL+H LL  FHP+  + S+ A Q  +   R +++F
Sbjct: 870428 KQVLVHMLLKKFHPK--LNSKHAGQNLIESKRNSTNF 870532



 Score = 27.3 bits (59), Expect = 9.2
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = -1

Query: 507   NANNFLDQTSMKPEDEGPGLSFSAGFEDPSTSTYIR---FLQEGLEKAK 552
             ++NNF+  TS   +++ P  S S  FED S + YI    +++  L K K
Sbjct: 97465 SSNNFVKSTSSLKKNDEPLKSSSNHFEDLSFNDYITSNDYIERFLSKKK 97319



 Score = 27.3 bits (59), Expect = 9.2
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = +1

Query: 496    VLPNGTVVHHINANNFLDQTSMKPEDEGPGLSFSAGFEDPSTSTYIRF 543
              +  N T +  I+ +   + T + P ++   L+ + GF+ PST+ + RF
Sbjct: 864982 IYQNTTSISKIDFSISENNTLIDPYNDKISLNIAHGFQRPSTTNFFRF 865125


>gb|CM000436.1| Cryptosporidium parvum Iowa II chromosome 8, whole genome shotgun sequence
          Length = 1344712

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = +3

Query: 154     GLRSWKRPAISSSTFYASQFK 174
               G RS  RP  SSST + SQFK
Sbjct: 1149723 GARSRSRPRYSSSTTFVSQFK 1149785


  Database: C.parvum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 9,102,324
  Number of sequences in database:  8
  
Lambda     K      H
   0.318    0.136    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,487,519
Number of Sequences: 8
Number of extensions: 85518
Number of successful extensions: 378
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 351
Number of HSP's gapped (non-prelim): 36
length of query: 557
length of database: 3,034,108
effective HSP length: 97
effective length of query: 460
effective length of database: 3,033,332
effective search space: 1395332720
effective search space used: 1395332720
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)