TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP12000018_1.0 gi|287325231|ref|NP_001004294.4| selenoprotein
N [Danio rerio]
         (557 letters)

Database: C.owczarzaki/genome.fa 
           89 sequences; 28,043,798 total letters

Searching........................................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

supercontig_1.6 of Capsaspora owczarzaki ATCC 30864                    39   0.009
supercontig_1.4 of Capsaspora owczarzaki ATCC 30864                    36   0.078
supercontig_1.1 of Capsaspora owczarzaki ATCC 30864                    34   0.30 
supercontig_1.7 of Capsaspora owczarzaki ATCC 30864                    29   7.3  

>supercontig_1.6 of Capsaspora owczarzaki ATCC 30864
          Length = 1617845

 Score = 38.9 bits (89), Expect = 0.009
 Identities = 44/168 (26%), Positives = 66/168 (39%), Gaps = 6/168 (3%)
 Frame = -2

Query: 64     EAGLKALGADGLFFFSSLDTDHDLYLSPEE----FKPIAEKLTGVAPP--PEYEEEIPHD 117
              +  L A GA+G    ++L   +D ++   +       I  +LTGV PP  P+ E+ +   
Sbjct: 909034 DPALSAAGANGNTSAAALYQTNDGWIKLNDGADGMLHIRMQLTGVVPPGSPDPEKTLSQG 908855

Query: 118    PNGETLTLHAKMQPLLLESMTKSKDGFLGVSHSSLSGLRSWKRPAISSSTFYASQFKVFL 177
              P    L          L S      G      SSL   RS   P++  S     Q     
Sbjct: 908854 PLQRLLRAATSSS---LASDANRTPGDSASLSSSLPSRRSEPSPSLPLSPMDLLQTSSTP 908684

Query: 178    PPSGKSAVGDTWWIIPSELNIFTGYLPNNRFHPPTPRGKEVLIHSLLS 225
              PP G+   G    ++P  ++I     P +   PP P GK    HS+L+
Sbjct: 908683 PPDGQGRSG----LLPRRVSILN---PRSLAGPPAPVGKSASKHSILA 908561


>supercontig_1.4 of Capsaspora owczarzaki ATCC 30864
          Length = 2141673

 Score = 35.8 bits (81), Expect = 0.078
 Identities = 31/119 (26%), Positives = 52/119 (43%)
 Frame = +2

Query: 93     EFKPIAEKLTGVAPPPEYEEEIPHDPNGETLTLHAKMQPLLLESMTKSKDGFLGVSHSSL 152
              E K  +EK     PPP + E+     +   LT HAK+     +   +S++ F GVS SS+
Sbjct: 285851 ESKAKSEKRPRPLPPPLWREK----KSKSMLTAHAKLTARSSKYSGRSRNSFAGVSASSM 286018

Query: 153    SGLRSWKRPAISSSTFYASQFKVFLPPSGKSAVGDTWWIIPSELNIFTGYLPNNRFHPP 211
              S LR +   +++ S     +  + +    KS++        +  N       +N F PP
Sbjct: 286019 SILRMYL*ASVNISVMRPREEDMVVKQRAKSSMKAN*EPTHNNENATNNNHVSNLFRPP 286195



 Score = 29.3 bits (64), Expect = 7.3
 Identities = 34/137 (24%), Positives = 51/137 (37%), Gaps = 9/137 (6%)
 Frame = +2

Query: 96      PIAEKLTGVAPPPEYEE--EIPHDPNGETLTLHAKMQPLLLESMTKSKDGFLGVSHSSLS 153
               P + K T VAPP        +P   +    TL          +M  S      ++  S++
Sbjct: 1484378 PSSAKATFVAPPRPSPPLVTVPCLSSVTLKTLATSRSKFWPTTMATSSTCLSAIARCSVA 1484557

Query: 154     GLR--SWKRPAISSSTFYASQFKV-----FLPPSGKSAVGDTWWIIPSELNIFTGYLPNN 206
                 R   W RP+ S  TF A++F           S  +    ++W IPS     +   P +
Sbjct: 1484558 TRR*LKWPRPSTSPPTF-ATRFSRARSSWLATSSTATPARSSFWSIPSTATTLSRSTPAS 1484734

Query: 207     RFHPPTPRGKEVLIHSL 223
               R   P+P      I SL
Sbjct: 1484735 RSSTPSPSKSRASILSL 1484785


>supercontig_1.1 of Capsaspora owczarzaki ATCC 30864
          Length = 3794667

 Score = 33.9 bits (76), Expect = 0.30
 Identities = 19/59 (32%), Positives = 30/59 (50%)
 Frame = +3

Query: 400     PFSEAFSRASAEKKLVHSILLWGALDDQSCUGSGRTLRETVLESSPVLALLNQSFISSW 458
               P +E    A+  K ++ +    G ++   C GS R  R T L  SP+ ++  QS +SSW
Sbjct: 3171219 PTTEFSKMATKMK*MMPTCRKIGEINRYHCAGSSRCWRPTWLHKSPIGSISEQSSLSSW 3171395



 Score = 30.4 bits (67), Expect = 3.3
 Identities = 32/131 (24%), Positives = 44/131 (33%), Gaps = 6/131 (4%)
 Frame = -1

Query: 83    TDHDLYLSPEEFKPIAEKLT-GVAPPPEYEEEIP--HDPNGETLTLHAKMQPLLLESMTK 139
             + H   +S  E   ++   T  V PPP           PN   L +HA     L      
Sbjct: 12483 SSHKAAVSESEPASLSSSPTIAVTPPPTDTTAATTVSTPNPNALLIHAGQDVAL----GY 12316

Query: 140   SKDGFLGVSHSSLSGLRSWKRPAISSS---TFYASQFKVFLPPSGKSAVGDTWWIIPSEL 196
               D  L     S     SW +   +SS      A  +   +PP   S +G     IP   
Sbjct: 12315 DSDSSLASPSPSFDSSASWSKSTSASSMASVAKARPYSTAIPPPDPSLLGRIGHCIPHRF 12136

Query: 197   NIFTGYLPNNR 207
             + +T   PN R
Sbjct: 12135 HTYTCISPNKR 12103


>supercontig_1.7 of Capsaspora owczarzaki ATCC 30864
          Length = 1544042

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +1

Query: 210    PPTPRGKEVLIHSLLSMFHPRPFVKSRFAPQGAVACIRATS 250
              PP PRGK +++  ++ M  P    K++     A  C+ + S
Sbjct: 624757 PPPPRGKTMMMMMMMMMMTPPEVPKAQIVVSSAALCLDSCS 624879


  Database: C.owczarzaki/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 28,043,798
  Number of sequences in database:  89
  
Lambda     K      H
   0.318    0.136    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,060,079
Number of Sequences: 89
Number of extensions: 349614
Number of successful extensions: 1622
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1465
Number of HSP's gapped (non-prelim): 400
length of query: 557
length of database: 9,347,932
effective HSP length: 104
effective length of query: 453
effective length of database: 9,338,676
effective search space: 4230420228
effective search space used: 4230420228
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)