TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP12000018_1.0 gi|287325231|ref|NP_001004294.4| selenoprotein
N [Danio rerio]
         (557 letters)

Database: C.muris/genome.fa 
           84 sequences; 9,245,251 total letters

Searching...................................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|DS989730.1| Cryptosporidium muris RN66 scf_1106632373475 geno...    30   1.9  
gb|DS989732.1| Cryptosporidium muris RN66 scf_1106632373461 geno...    29   2.4  
gb|DS989728.1| Cryptosporidium muris RN66 scf_1106632373407 geno...    28   5.4  

>gb|DS989730.1| Cryptosporidium muris RN66 scf_1106632373475 genomic scaffold, whole
              genome shotgun sequence
          Length = 723783

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 29/99 (29%), Positives = 44/99 (44%), Gaps = 9/99 (9%)
 Frame = -3

Query: 96     PIAEKLTG-------VAPPPEYE-EEIPHDPNGETLTLHAKMQPLLLESMTKSKDGFLGV 147
              PIA+KL G       ++ P +Y  EEIP+DPN        +   L L S  ++   + G+
Sbjct: 458908 PIADKLIGEDKSNTTLSIPSKYMCEEIPNDPN------ELRSFTLSLVSEYRTLWNYTGI 458747

Query: 148    SHSSLSGLRSWKRPAISS-STFYASQFKVFLPPSGKSAV 185
               + S    RS +R  +      Y   F V   P+ +S V
Sbjct: 458746 LYESYQSRRSMQRKYLEQIRDLYGCDFHVAYIPTLQSEV 458630


>gb|DS989732.1| Cryptosporidium muris RN66 scf_1106632373461 genomic scaffold, whole
              genome shotgun sequence
          Length = 567910

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +3

Query: 456    SSWSLVKELEDLQGDVKNLELSEKARLHLEKYTFPVQMM 494
              S++S+V    DL  ++   +L    + H+EKY+F V ++
Sbjct: 372306 SAFSVVSHCVDLNANISTAQLESLVQEHIEKYSFLVPLV 372422


>gb|DS989728.1| Cryptosporidium muris RN66 scf_1106632373407 genomic scaffold, whole
              genome shotgun sequence
          Length = 965821

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -1

Query: 383    SRRLEVTMYPFKKVPYLPFSEAFSRASAEKKLVHSIL 419
              S +L   +  +  +P L FSEA SRA+ E++   SI+
Sbjct: 540010 SNKLTPPIIQYSHIPALNFSEATSRATIEEEQAESIV 539900


  Database: C.muris/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 9,245,251
  Number of sequences in database:  84
  
Lambda     K      H
   0.318    0.136    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,362,954
Number of Sequences: 84
Number of extensions: 80675
Number of successful extensions: 335
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 287
Number of HSP's gapped (non-prelim): 109
length of query: 557
length of database: 3,081,750
effective HSP length: 97
effective length of query: 460
effective length of database: 3,073,602
effective search space: 1413856920
effective search space used: 1413856920
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)