TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP12000018_1.0 gi|287325231|ref|NP_001004294.4| selenoprotein
N [Danio rerio]
         (557 letters)

Database: C.merolae/genome.fa 
           20 sequences; 16,546,747 total letters

Searching....................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|AP006499.2| Cyanidioschyzon merolae DNA, chromosome 17, comp...    35   0.10 
dbj|AP006496.2| Cyanidioschyzon merolae DNA, chromosome 14, comp...    29   4.3  
dbj|AP006502.2| Cyanidioschyzon merolae DNA, chromosome 20, comp...    28   7.4  
dbj|AP006486.2| Cyanidioschyzon merolae DNA, chromosome 4, compl...    28   9.7  
dbj|AP006491.2| Cyanidioschyzon merolae DNA, chromosome 9, compl...    28   9.7  
dbj|AP006497.2| Cyanidioschyzon merolae DNA, chromosome 15, comp...    28   9.7  

>dbj|AP006499.2| Cyanidioschyzon merolae DNA, chromosome 17, complete genome, complete
              sequence
          Length = 1232258

 Score = 34.7 bits (78), Expect = 0.10
 Identities = 40/131 (30%), Positives = 53/131 (40%), Gaps = 20/131 (15%)
 Frame = -2

Query: 152    LSGLRSWKRPAISSSTFYASQFKVFLPPS----GKSA----VGDTWWIIPSELNIFTGYL 203
              L  + SW R  I    FYA+ FKVF   +     +SA    +GD W   PS       +L
Sbjct: 393544 LGVVASWSR-IIGQQRFYAAPFKVFRHLAKMHCAQSACTLCMGDEWHHFPSSF-----FL 393383

Query: 204    PNNRFHPPTPRGKEVLIHSLLSMFHPRPFVKSRFAPQGA------------VACIRATSD 251
              P N     T R   +   SLL    P+PFV +   P+G             VA I    D
Sbjct: 393382 PGNT----TLRFVRMNASSLL----PKPFVSTNIVPEGMNDRNAPVYDDRFVASIAEECD 393227

Query: 252    FYYDIVFRIHA 262
              F+  +V  + A
Sbjct: 393226 FFAGLVNDVKA 393194


>dbj|AP006496.2| Cyanidioschyzon merolae DNA, chromosome 14, complete genome, complete
              sequence
          Length = 852727

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 20/71 (28%), Positives = 31/71 (43%)
 Frame = -1

Query: 436    LRETVLESSPVLALLNQSFISSWSLVKELEDLQGDVKNLELSEKARLHLEKYTFPVQMMV 495
              LR T      VL +       S   V+E+E L   +   +  +  R+HLE+YT PV +  
Sbjct: 454669 LRATCTRHRSVLKVCRTGMRGSVPSVREIETLLSQLPWRQF-QSPRVHLEQYTTPVHLA- 454496

Query: 496    VLPNGTVVHHI 506
                    + HH+
Sbjct: 454495 ----ARIAHHV 454475


>dbj|AP006502.2| Cyanidioschyzon merolae DNA, chromosome 20, complete genome, complete
              sequence
          Length = 1621617

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 26/107 (24%), Positives = 47/107 (43%), Gaps = 8/107 (7%)
 Frame = -1

Query: 121    ETLTLHAKMQP-----LLLE---SMTKSKDGFLGVSHSSLSGLRSWKRPAISSSTFYASQ 172
              E  T H+ + P     ++LE   S+ +   GFLG + SS  G  + +   + + TF+   
Sbjct: 756942 EKRTTHSTVMPACNSSIVLE*IASIGEGMAGFLG-NGSSRRGSANVREQQVRTDTFFRKV 756766

Query: 173    FKVFLPPSGKSAVGDTWWIIPSELNIFTGYLPNNRFHPPTPRGKEVL 219
               +V + PSG   + D  + + +        +P N       RG+ +L
Sbjct: 756765 VQVCVVPSGSDGLVDARYAVVA--------IPTNTIAVSV*RGRHIL 756649


>dbj|AP006486.2| Cyanidioschyzon merolae DNA, chromosome 4, complete genome, complete
             sequence
          Length = 513455

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
 Frame = +1

Query: 216   KEVLIHSLLSMFHPRPFVKSRFAPQGAVACIRATSDFYYDIV----FRIHAEFQLNDVPD 271
             K  L+HS + + H    + +R  PQG V+ +  +       +     R HA  QL  +  
Sbjct: 63559 KCTLLHSRVDLHHVMFPMSTRQVPQGLVSVVNNSRGVDPSTLALCTARSHA--QLEVIAA 63732

Query: 272   FPFWFTPGQFAGHIILSKDASHV 294
              P +  PG F+     + DA HV
Sbjct: 63733 LPAFLVPGSFSMLEAKTADAGHV 63801


>dbj|AP006491.2| Cyanidioschyzon merolae DNA, chromosome 9, complete genome, complete
             sequence
          Length = 810151

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = -1

Query: 525   GLSFSAGFEDPSTSTYIRFLQEGLEKAKPYL 555
             GL  SAG  DPSTS   + +     KA P L
Sbjct: 45478 GLEISAGMVDPSTSASCKAMTHSPSKANPAL 45386


>dbj|AP006497.2| Cyanidioschyzon merolae DNA, chromosome 15, complete genome, complete
              sequence
          Length = 902900

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
 Frame = -3

Query: 236    RFAPQGAVACIRATSDFYYDIVF---RIHAEFQLNDVPDFPFWFTPGQFAGHIIL 287
              RF   G  A   A  D    + F        FQ+   P   FW  P QF+G +++
Sbjct: 403452 RFLVSGVGAYGGAVEDLIESVAFINPSFDTSFQVLRFPTVAFWCQPSQFSGSLLI 403288


  Database: C.merolae/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 16,546,747
  Number of sequences in database:  20
  
Lambda     K      H
   0.318    0.136    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,315,193
Number of Sequences: 20
Number of extensions: 186837
Number of successful extensions: 858
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 821
Number of HSP's gapped (non-prelim): 229
length of query: 557
length of database: 5,515,582
effective HSP length: 101
effective length of query: 456
effective length of database: 5,513,562
effective search space: 2514184272
effective search space used: 2514184272
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)