TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP12000018_1.0 gi|287325231|ref|NP_001004294.4| selenoprotein
N [Danio rerio]
         (557 letters)

Database: A.taiwanensis/genome.fa 
           5379 sequences; 6,149,411 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABJQ01001477.1| Ascogregarina taiwanensis Contig1690, whole g...    28   2.8  
gb|ABJQ01002470.1| Ascogregarina taiwanensis Contig2776, whole g...    28   3.6  
gb|ABJQ01002844.1| Ascogregarina taiwanensis Contig3165, whole g...    27   8.1  

>gb|ABJQ01001477.1| Ascogregarina taiwanensis Contig1690, whole genome shotgun sequence
          Length = 368

 Score = 28.1 bits (61), Expect = 2.8
 Identities = 19/52 (36%), Positives = 26/52 (50%)
 Frame = -3

Query: 293 HVRDFHIYVPNDKTLNVDMEWLYGASETSNMEVDIGYLPQMELGAEGPSTPS 344
           HVRD HI +      +  +E++     T NME  IG L  M+ G E   TP+
Sbjct: 147 HVRDTHIGL----VASAQLEFVL-LLHTDNMESPIGVLRMMKGGEESTRTPN 7


>gb|ABJQ01002470.1| Ascogregarina taiwanensis Contig2776, whole genome shotgun sequence
          Length = 2219

 Score = 27.7 bits (60), Expect = 3.6
 Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 11/75 (14%)
 Frame = -2

Query: 272  FPFWFTPGQFAGHIILSKDAS-----------HVRDFHIYVPNDKTLNVDMEWLYGASET 320
            +PF  TPGQ A  ++L   AS           H  +  IY P D    V   WLY     
Sbjct: 1903 YPFLMTPGQSAAVLLLMPAASSSVSNSLPPDGHFANLCIYKPRDHA--VMPCWLYHFQWC 1730

Query: 321  SNMEVDIGYLPQMEL 335
              +    G+ P ++L
Sbjct: 1729 QRLLRPAGFDPHIQL 1685


>gb|ABJQ01002844.1| Ascogregarina taiwanensis Contig3165, whole genome shotgun sequence
          Length = 2533

 Score = 26.6 bits (57), Expect = 8.1
 Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 4/89 (4%)
 Frame = -2

Query: 382  ASRRLEVTMYPFKKVPYLPFSEAFSRASAEKKLVHSILLWGALDDQSCUGSG----RTLR 437
            A ++++VT     KVP+    +     S  +++  ++++W          +G    RT R
Sbjct: 2049 ARQQIQVTPNHVMKVPWRVVMQRLIACSHRRRVSSALVIWTNSSSSCAAAAGCLA*RTGR 1870

Query: 438  ETVLESSPVLALLNQSFISSWSLVKELED 466
               L   P+   L+     SW  ++ L D
Sbjct: 1869 RPTLW*CPLWKFLSHLLCLSWPRIRCLVD 1783


  Database: A.taiwanensis/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 6,149,411
  Number of sequences in database:  5379
  
Lambda     K      H
   0.318    0.136    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,259,146
Number of Sequences: 5379
Number of extensions: 70169
Number of successful extensions: 307
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 307
length of query: 557
length of database: 2,049,803
effective HSP length: 92
effective length of query: 465
effective length of database: 1,554,935
effective search space: 723044775
effective search space used: 723044775
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)