TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP11000018_1.0 # gi|298231231|ref|NP_001177172.1|
selenoprotein N, 1 [Ciona intestinalis]
         (580 letters)

Database: T.trahens/genome.fa 
           131 sequences; 28,680,627 total letters

Searching.................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL349443.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    31   2.1  
gb|GL349449.1| Thecamonas trahens ATCC 50062 unplaced genomic sc...    29   7.8  

>gb|GL349443.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.11,
              whole genome shotgun sequence
          Length = 571036

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 10/60 (16%)
 Frame = +2

Query: 441    RASVENKLIHQVVLWGALDDQSCXGSGRTLRETALESSPVI----------QLLNQSFIS 490
              RAS   +   Q +LWGALDD +  G     RE  L  SP +           LL+Q +IS
Sbjct: 171485 RASGNCRT*AQGLLWGALDDAARHGGRLPHREAGLRRSPAVPAERRAILMGPLLHQHYIS 171664


>gb|GL349449.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.17,
              whole genome shotgun sequence
          Length = 533784

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = -3

Query: 468    RTLRETALESSPVIQLLNQSFISTWSLLKDLEVISNDKQSPLSNVANL 515
              RT   T    +P      Q F +T SLLK   ++SN+K S L  ++ L
Sbjct: 368170 RTTASTPTARTPTSTAR*QPFFATTSLLKPDTILSNEKHSSLPGLSAL 368027


  Database: T.trahens/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 28,680,627
  Number of sequences in database:  131
  
Lambda     K      H
   0.317    0.133    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,524,040
Number of Sequences: 131
Number of extensions: 239302
Number of successful extensions: 944
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 912
Number of HSP's gapped (non-prelim): 98
length of query: 580
length of database: 9,560,209
effective HSP length: 105
effective length of query: 475
effective length of database: 9,546,454
effective search space: 4534565650
effective search space used: 4534565650
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)