TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP11000018_1.0 # gi|298231231|ref|NP_001177172.1|
selenoprotein N, 1 [Ciona intestinalis]
         (580 letters)

Database: S.parasitica/genome.fa 
           1445 sequences; 53,132,636 total letters

Searching...................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GG744140.1| Saprolegnia parasitica CBS 223.65 genomic scaffol...    31   3.8  
gb|GG743957.1| Saprolegnia parasitica CBS 223.65 genomic scaffol...    31   3.8  
gb|GG744006.1| Saprolegnia parasitica CBS 223.65 genomic scaffol...    31   4.9  

>gb|GG744140.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.258,
            whole genome shotgun sequence
          Length = 19584

 Score = 31.2 bits (69), Expect = 3.8
 Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
 Frame = -1

Query: 342  WETNDPNAPENNMEVDIGFLPLMTINQTQPSSPMILNNDDGTSIDRRELIKQGKDIVVEF 401
            W   + NAP + ++V +  +P   I +      +    DDGTSI    +I Q  D+    
Sbjct: 1011 WSAVESNAPFHMIDVSLASMPEAYITEFNRYHTVPFLLDDGTSIFESAIIAQFLDVKYNG 832

Query: 402  DEIQWKD---DAITTQYAHGQLE 421
             ++  +D    A   Q A  +LE
Sbjct: 831  GKLHQRDHPEHAALAQLAQAKLE 763


>gb|GG743957.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.75, whole
             genome shotgun sequence
          Length = 160209

 Score = 31.2 bits (69), Expect = 3.8
 Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 13/97 (13%)
 Frame = +2

Query: 113   RQLYDFILSEDILKASHEVEEEITKEIFDPSTDEIVQLKADM-------IPLVLSSMS-- 163
             R+LY+   +  +L++    E EI    + P  D++V+L+ ++        PL LSS+S  
Sbjct: 53090 RELYE--CAARVLESRFPSEPEIRSTSWSP--DQVVELRDELGLGDIRPSPLALSSLSLD 53257

Query: 164   ----QTNKNPAFGTPLFHYSKDFSGLVAWKSVKTEQK 196
                 ++ + P    P     +DF G+  WKS +   K
Sbjct: 53258 LAASRSTRVPCSCGPCVDTGQDFVGVDTWKSWRCHAK 53368


>gb|GG744006.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.124,
           whole genome shotgun sequence
          Length = 89985

 Score = 30.8 bits (68), Expect = 4.9
 Identities = 15/33 (45%), Positives = 22/33 (66%)
 Frame = -2

Query: 376 ILNNDDGTSIDRRELIKQGKDIVVEFDEIQWKD 408
           IL+ DD  SI RR +++  +DIVV  + + WKD
Sbjct: 131 ILSEDDAESIGRRLVVE--RDIVVRTETVGWKD 39


  Database: S.parasitica/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 53,132,636
  Number of sequences in database:  1445
  
Lambda     K      H
   0.317    0.133    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,793,070
Number of Sequences: 1445
Number of extensions: 396247
Number of successful extensions: 1801
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 1506
Number of HSP's gapped (non-prelim): 756
length of query: 580
length of database: 17,710,878
effective HSP length: 109
effective length of query: 471
effective length of database: 17,553,373
effective search space: 8267638683
effective search space used: 8267638683
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)