TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP11000018_1.0 # gi|298231231|ref|NP_001177172.1|
selenoprotein N, 1 [Ciona intestinalis]
         (580 letters)

Database: P.ultimum/genome.fa 
           82 sequences; 42,801,618 total letters

Searching.................................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL376564.1| Pythium ultimum DAOM BR144 unplaced genomic scaff...    30   8.9  

>gb|GL376564.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875581313,
              whole genome shotgun sequence
          Length = 1115623

 Score = 29.6 bits (65), Expect = 8.9
 Identities = 26/102 (25%), Positives = 37/102 (36%), Gaps = 16/102 (15%)
 Frame = -3

Query: 151    KADMIPLVLSSMSQTNKNPAF----------------GTPLFHYSKDFSGLVAWKSVKTE 194
              + D+  L+ SSM+ T  +P                    PL H     S L+   +   +
Sbjct: 678041 RGDVFSLLRSSMALTWSDPLLKIATDVAQGVTYLHNCDPPLVHRDLKSSNLLCTPTYSCK 677862

Query: 195    QKDLYAKEFKAFLPNNSSQLVGEPYWLIQRPNNPEELTSNRY 236
                D    + +    N  S +VG PYWL      PE L   RY
Sbjct: 677861 LSDFGESKRQTVTGNLFSTIVGTPYWLA-----PEILREERY 677751


  Database: P.ultimum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 42,801,618
  Number of sequences in database:  82
  
Lambda     K      H
   0.317    0.133    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,535,008
Number of Sequences: 82
Number of extensions: 329957
Number of successful extensions: 1559
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1543
Number of HSP's gapped (non-prelim): 133
length of query: 580
length of database: 14,267,206
effective HSP length: 108
effective length of query: 472
effective length of database: 14,258,350
effective search space: 6729941200
effective search space used: 6729941200
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)