TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP11000018_1.0 # gi|298231231|ref|NP_001177172.1|
selenoprotein N, 1 [Ciona intestinalis]
         (580 letters)

Database: P.tricornutum/genome.fa 
           31 sequences; 23,733,684 total letters

Searching...............................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000628.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    31   2.2  
gb|CM000618.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    29   6.5  

>gb|CM000628.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 26, whole genome
             shotgun sequence
          Length = 441226

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 11/98 (11%)
 Frame = -3

Query: 216   GEPYWLIQRPN--NPEELTSNRYRYPIPKTKIEKLLHNLLVMFHPRPFVTMRFSPQGAAA 273
             GE + + QR +  NP+  +       +P+T+ + +L  L+ + H +P+   R SPQ   A
Sbjct: 27485 GEGFTIKQRCSRVNPQHQSFQVEVLRLPQTQFKAVLSKLVGVHHQQPY--QRESPQSPPA 27312

Query: 274   VIRAQNQVY-------LEIVFRF--HSEFQLNEPPYLP 302
               R QN +        L I F    H E ++N  P  P
Sbjct: 27311 TQRHQNMITFKAQIPPLNIPFPLENHRERKMNGRPCCP 27198


>gb|CM000618.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 16, whole genome shotgun
              sequence
          Length = 764225

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -1

Query: 265    RFSPQGAAAVIRAQNQVYLEIVFRFHSEFQLNEPPYLPYWFT 306
              +F+P G A+ I A   +   +      E  L E P+LPYW T
Sbjct: 369815 QFAPSGNASTIIAGAPLISSLNENVSYENSLGEGPFLPYWQT 369690


  Database: P.tricornutum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 23,733,684
  Number of sequences in database:  31
  
Lambda     K      H
   0.317    0.133    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,622,399
Number of Sequences: 31
Number of extensions: 213915
Number of successful extensions: 1024
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1002
Number of HSP's gapped (non-prelim): 183
length of query: 580
length of database: 7,911,228
effective HSP length: 104
effective length of query: 476
effective length of database: 7,908,004
effective search space: 3764209904
effective search space used: 3764209904
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)