TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP11000018_1.0 # gi|298231231|ref|NP_001177172.1| selenoprotein N, 1 [Ciona intestinalis] (580 letters) Database: P.pallidum/genome.fa 42 sequences; 32,942,533 total letters Searching..........................................done Score E Sequences producing significant alignments: (bits) Value gb|GL291009.1| Polysphondylium pallidum PN500 unplaced genomic s... 34 0.36 gb|GL290991.1| Polysphondylium pallidum PN500 unplaced genomic s... 31 3.1 gb|GL290997.1| Polysphondylium pallidum PN500 unplaced genomic s... 30 4.0 gb|GL290993.1| Polysphondylium pallidum PN500 unplaced genomic s... 30 4.0 gb|GL290983.1| Polysphondylium pallidum PN500 unplaced genomic s... 30 4.0 gb|GL291012.1| Polysphondylium pallidum PN500 unplaced genomic s... 30 5.3 gb|GL290986.1| Polysphondylium pallidum PN500 unplaced genomic s... 30 5.3 gb|GL290998.1| Polysphondylium pallidum PN500 unplaced genomic s... 29 9.0 gb|GL290988.1| Polysphondylium pallidum PN500 unplaced genomic s... 29 9.0 gb|GL290985.1| Polysphondylium pallidum PN500 unplaced genomic s... 29 9.0 >gb|GL291009.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_contig12, whole genome shotgun sequence Length = 1458135 Score = 33.9 bits (76), Expect = 0.36 Identities = 50/212 (23%), Positives = 90/212 (42%), Gaps = 11/212 (5%) Frame = +3 Query: 4 NRKSRIKENVKREE-----KVTANDEKQQADKPTEVPHSISENKK-KEPNDKCLTFVVVF 57 ++KS K K EE + T + KQ++ K ++ E K KE + LT + Sbjct: 452103 SKKSSFKLTEKYEEYRTVSEYTIEESKQESMKIAQILTKTEEKLKLKELRELSLTHQITQ 452282 Query: 58 AAAVIAIALG--LQVYVYSIIQENAKNAAVRQLGQ-HGLK--LFKEYDINKDMQIDPKEF 112 + + LQ+ +Q + +GQ +G++ L + + NK +Q D Sbjct: 452283 LQEELVVLRNQALQMETEKQLQLEEVKSLSNNVGQLNGMRSALSESKEANKKLQSDMDSL 452462 Query: 113 RQLYDFILSEDILKASHEVEEEITKEIFDPSTDEIVQLKADMIPLVLSSMSQTNKNPAFG 172 + D +L++ I +E +EEI + +++ K + + + K+ A Sbjct: 452463 FERMD-VLNQRI----NEQDEEI---------NHLLKQKTEAQLQIAPLRDEIEKHRANT 452600 Query: 173 TPLFHYSKDFSGLVAWKSVKTEQKDLYAKEFK 204 T L + DFS + KTEQ DL K++K Sbjct: 452601 TLLDKLAGDFSTMKRMYQEKTEQVDLLTKKYK 452696 >gb|GL290991.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold9, whole genome shotgun sequence Length = 2264991 Score = 30.8 bits (68), Expect = 3.1 Identities = 14/33 (42%), Positives = 17/33 (51%) Frame = -3 Query: 17 EKVTANDEKQQADKPTEVPHSISENKKKEPNDK 49 EK T N + DKPT+ PH K K+ DK Sbjct: 1330456 EKPTNNPTDKPTDKPTDKPHEHKHKKDKKNKDK 1330358 >gb|GL290997.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold15, whole genome shotgun sequence Length = 551677 Score = 30.4 bits (67), Expect = 4.0 Identities = 14/49 (28%), Positives = 27/49 (55%) Frame = +3 Query: 496 KDLEVISNDKQSPLSNVANLSIEAYKFPVQMMVILPNGTVISSLNANDW 544 K +++++N P +N +N+ ++ KF Q I NG+ I + +N W Sbjct: 146634 KIVKIVNNYSNKPATNPSNVQVQ--KFNNQFFTIGTNGSFIFDMASNSW 146774 >gb|GL290993.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold11, whole genome shotgun sequence Length = 1505626 Score = 30.4 bits (67), Expect = 4.0 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Frame = +2 Query: 192 KTEQKDLYAKEFKAFLPNNSSQLVGEPY-WLIQRPNNPEELTSNRYRYPI 240 K + D + FK N S Q+V +PY WL + + +++SN+Y Y I Sbjct: 149807 KIRRDDSVSDTFKR--TNGSEQIVKDPYRWLEDQNSEETKVSSNKYNYKI 149950 Score = 30.0 bits (66), Expect = 5.3 Identities = 15/55 (27%), Positives = 26/55 (47%) Frame = -2 Query: 525 QMMVILPNGTVISSLNANDWLAQANGEVPVDEKWLSLGSKDYNTFLSNALEASKN 579 Q+ ++ P VI S DW ++NGE+ + S + N + N L+ +N Sbjct: 1079061 QLEMVKPFNNVIDSRYVYDWQGKSNGEITI-----SYNPNNANNIIKNVLDKPQN 1078912 >gb|GL290983.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold1, whole genome shotgun sequence Length = 1995969 Score = 30.4 bits (67), Expect = 4.0 Identities = 15/44 (34%), Positives = 24/44 (54%) Frame = -3 Query: 6 KSRIKENVKREEKVTANDEKQQADKPTEVPHSISENKKKEPNDK 49 K + KE K +EK ++K++ +K E + KKKE N+K Sbjct: 325987 KEKKKEKEKEKEKSKEKEKKKEKEKIKEKEKEKEKEKKKENNEK 325856 Score = 30.0 bits (66), Expect = 5.3 Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 3/103 (2%) Frame = -2 Query: 165 TNKNPAFGTPLFHYSK-DFSGLVA--WKSVKTEQKDLYAKEFKAFLPNNSSQLVGEPYWL 221 T ++P+F F Y++ DF + A + + DL A+E + + + Sbjct: 1906337 TIESPSF----FKYNQTDFKEIPARGFSNPSVGSMDLLAREIDHLMQGERDSKITDRINF 1906170 Query: 222 IQRPNNPEELTSNRYRYPIPKTKIEKLLHNLLVMFHPRPFVTM 264 ++R E+T++ Y Y +IEK +L + PRP + M Sbjct: 1906169 VERRRLEAEITNDFYEYEENLDRIEKAKKSLDLNILPRPMLEM 1906041 >gb|GL291012.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_contig15, whole genome shotgun sequence Length = 727357 Score = 30.0 bits (66), Expect = 5.3 Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 1/79 (1%) Frame = +3 Query: 330 VPNNKKLNVDMEWETNDPNAPENNMEVDIGFLPLMTIN-QTQPSSPMILNNDDGTSIDRR 388 +P N ++ TN+ N NN P + ++ +ILNN+ +++ Sbjct: 259194 IPTITNTNTNINTNTNNTNTNINNTNTSSNVTPTTSPTLESNVQQNIILNNNSNKETNQQ 259373 Query: 389 ELIKQGKDIVVEFDEIQWK 407 + +Q DI+ +EI K Sbjct: 259374 QQQQQQHDIISSLEEILCK 259430 >gb|GL290986.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold4, whole genome shotgun sequence Length = 1229170 Score = 30.0 bits (66), Expect = 5.3 Identities = 19/75 (25%), Positives = 42/75 (56%), Gaps = 3/75 (4%) Frame = +3 Query: 5 RKSRIKENVKREEKVTANDEKQQADKPTEVPHSISENKKKEPN---DKCLTFVVVFAAAV 61 +K++ E ++ E E+++A +E+ S++ K PN ++ +TFV+VF + Sbjct: 409119 KKNKSIEELRAERLAREEKERKRA---SELIKQKSKSTKL*PNL*INQLITFVIVFMIII 409289 Query: 62 IAIALGLQVYVYSII 76 I I + + VY++ ++ Sbjct: 409290 ITIIIIV*VYIHCLL 409334 >gb|GL290998.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_contig1, whole genome shotgun sequence Length = 1301413 Score = 29.3 bits (64), Expect = 9.0 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 2/69 (2%) Frame = +1 Query: 475 LESSPVIQLLN-QSFISTWSLLKDLE-VISNDKQSPLSNVANLSIEAYKFPVQMMVILPN 532 L + P+ +LL+ S+IS+W + E VIS+D QSP + S+ + + V N Sbjct: 929104 LTTKPLHRLLHADSWISSWKWVPSSEPVISSDSQSPFKTPRSTSLVWFF*TIGPPVTSKN 929283 Query: 533 GTVISSLNA 541 G S+++ Sbjct: 929284 GNTFHSVHS 929310 >gb|GL290988.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold6, whole genome shotgun sequence Length = 2018088 Score = 29.3 bits (64), Expect = 9.0 Identities = 15/80 (18%), Positives = 37/80 (46%), Gaps = 2/80 (2%) Frame = -3 Query: 227 NPEELTSNRYRYPIPKTKIEKLLHNLLVMFHPRPFVTMRFSPQGAAAVIRAQNQVYLEIV 286 +P L +R+++PI K++ + H++ ++H +P Q + +Q+ + Sbjct: 1248202 HPSPLHRHRHQHPISNKKLQPIQHHMQYLYHHQPSQQH*QQQQTTIITMYKHHQIINKTT 1248023 Query: 287 FR--FHSEFQLNEPPYLPYW 304 + H +F +++ Y W Sbjct: 1248022 MKVVIHQQFLVHQLHY*MNW 1247963 >gb|GL290985.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold3, whole genome shotgun sequence Length = 2290287 Score = 29.3 bits (64), Expect = 9.0 Identities = 12/30 (40%), Positives = 23/30 (76%), Gaps = 1/30 (3%) Frame = +1 Query: 356 VDIGFLPLMTINQTQ-PSSPMILNNDDGTS 384 VD+ FL + ++Q Q PSSP+++NN++ ++ Sbjct: 1567843 VDLSFLDQIKLDQQQQPSSPLVINNNNNSN 1567932 Database: P.pallidum/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 32,942,533 Number of sequences in database: 42 Lambda K H 0.317 0.133 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 19,870,821 Number of Sequences: 42 Number of extensions: 287872 Number of successful extensions: 1450 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 10 Number of HSP's that attempted gapping in prelim test: 1329 Number of HSP's gapped (non-prelim): 431 length of query: 580 length of database: 10,980,844 effective HSP length: 106 effective length of query: 474 effective length of database: 10,976,392 effective search space: 5202809808 effective search space used: 5202809808 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 64 (29.3 bits)