TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP11000018_1.0 # gi|298231231|ref|NP_001177172.1| selenoprotein N, 1 [Ciona intestinalis] (580 letters) Database: N.gruberi/genome.fa 784 sequences; 40,964,085 total letters Searching....................................................done Score E Sequences producing significant alignments: (bits) Value gb|GG738847.1| Naegleria gruberi genomic scaffold NAEGRscaffold_... 35 0.20 gb|GG738850.1| Naegleria gruberi genomic scaffold NAEGRscaffold_... 33 0.77 gb|GG738855.1| Naegleria gruberi genomic scaffold NAEGRscaffold_... 32 1.3 gb|GG738877.1| Naegleria gruberi genomic scaffold NAEGRscaffold_... 32 1.7 gb|GG738881.1| Naegleria gruberi genomic scaffold NAEGRscaffold_... 31 2.9 gb|GG738852.1| Naegleria gruberi genomic scaffold NAEGRscaffold_... 31 2.9 gb|GG738846.1| Naegleria gruberi genomic scaffold NAEGRscaffold_... 31 2.9 gb|GG738880.1| Naegleria gruberi genomic scaffold NAEGRscaffold_... 30 5.0 gb|GG738848.1| Naegleria gruberi genomic scaffold NAEGRscaffold_... 30 6.5 gb|GG738903.1| Naegleria gruberi genomic scaffold NAEGRscaffold_... 30 8.5 gb|GG738853.1| Naegleria gruberi genomic scaffold NAEGRscaffold_... 30 8.5 >gb|GG738847.1| Naegleria gruberi genomic scaffold NAEGRscaffold_3, whole genome shotgun sequence Length = 941567 Score = 35.0 bits (79), Expect = 0.20 Identities = 19/50 (38%), Positives = 31/50 (62%) Frame = +2 Query: 480 VIQLLNQSFISTWSLLKDLEVISNDKQSPLSNVANLSIEAYKFPVQMMVI 529 +IQLLNQ I LL D+++ SN+K P +NV + + A + V ++V+ Sbjct: 125762 LIQLLNQEMIVN*KLLGDIKISSNNKSRPNNNVVHHLLLALEKRVVLLVL 125911 >gb|GG738850.1| Naegleria gruberi genomic scaffold NAEGRscaffold_6, whole genome shotgun sequence Length = 707703 Score = 33.1 bits (74), Expect = 0.77 Identities = 14/46 (30%), Positives = 27/46 (58%) Frame = -1 Query: 4 NRKSRIKENVKREEKVTANDEKQQADKPTEVPHSISENKKKEPNDK 49 ++K +K+ K+EEK + +EK + ++ T S + +KKE +K Sbjct: 322527 DQKEEVKKEEKKEEKTSETEEKVEQEEKTSEKKSEEKKEKKEKKEK 322390 >gb|GG738855.1| Naegleria gruberi genomic scaffold NAEGRscaffold_11, whole genome shotgun sequence Length = 613270 Score = 32.3 bits (72), Expect = 1.3 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%) Frame = +2 Query: 209 NNSSQLVGEPYWLIQRP--NNPEELTSNRYRYPIPKTKIEKLLHNLLVMF 256 NN++Q + P+W +Q+P N L NR P +E +LH + ++F Sbjct: 426314 NNNNQTLNPPFWKLQQPSLNQVHHLQVNRQLLP----PLELILHTVTILF 426451 Score = 31.2 bits (69), Expect = 2.9 Identities = 19/51 (37%), Positives = 22/51 (43%) Frame = +1 Query: 96 FKEYDINKDMQIDPKEFRQLYDFILSEDILKASHEVEEEITKEIFDPSTDE 146 FK +DI D ID EF QLY FI + + KE D DE Sbjct: 123274 FKVFDIGSDGYIDYYEFSQLYHFIFGNHKENEERAAKNQTVKE--DKELDE 123420 >gb|GG738877.1| Naegleria gruberi genomic scaffold NAEGRscaffold_33, whole genome shotgun sequence Length = 394700 Score = 32.0 bits (71), Expect = 1.7 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 7/53 (13%) Frame = +3 Query: 11 ENVKREEKVTAND-------EKQQADKPTEVPHSISENKKKEPNDKCLTFVVV 56 EN+++ E V+ + EK+Q +KPTE E+KKK D L F+ V Sbjct: 295419 ENIEKTEAVSTIETAEPVKKEKKQKEKPTEEKTEKKESKKKSNEDLSLDFLEV 295577 >gb|GG738881.1| Naegleria gruberi genomic scaffold NAEGRscaffold_37, whole genome shotgun sequence Length = 379849 Score = 31.2 bits (69), Expect = 2.9 Identities = 18/84 (21%), Positives = 42/84 (50%), Gaps = 3/84 (3%) Frame = -2 Query: 378 NNDDGTSIDRRELIKQGKDIVVEFDEIQWKDDAITTQYAHGQLEKL---FFPFKKVDYLP 434 N+ S +R+ +IKQ + ++ E++E+Q DD + + + K+ + K + P Sbjct: 150612 NDQTEVSCERKRIIKQCRKLLKEYEEVQVSDDELNIFFDRVIIAKINRDYERSKNLKETP 150433 Query: 435 FNEAFKRASVENKLIHQVVLWGAL 458 +++ + + +I + V W +L Sbjct: 150432 YSKLETSLNPSHSIIAKQVDWESL 150361 >gb|GG738852.1| Naegleria gruberi genomic scaffold NAEGRscaffold_8, whole genome shotgun sequence Length = 938756 Score = 31.2 bits (69), Expect = 2.9 Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 4/72 (5%) Frame = -2 Query: 158 VLSSMSQTNKNPAFGT-PLFHYS-KDF--SGLVAWKSVKTEQKDLYAKEFKAFLPNNSSQ 213 +L+ + QT+K+PA + +F S +F S + AWK+VK + L + N SS Sbjct: 40138 ILNCLIQTSKSPAVNS*KMFQPSGPNFLRS*ITAWKNVKLNKSFLNSTGLDECSINVSS* 39959 Query: 214 LVGEPYWLIQRP 225 L EP+ L+ +P Sbjct: 39958 LSNEPFKLVDKP 39923 >gb|GG738846.1| Naegleria gruberi genomic scaffold NAEGRscaffold_2, whole genome shotgun sequence Length = 1001995 Score = 31.2 bits (69), Expect = 2.9 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 3/52 (5%) Frame = -2 Query: 1 MLRNRKSRI---KENVKREEKVTANDEKQQADKPTEVPHSISENKKKEPNDK 49 +L N+++R+ E +K EK+ N K ADK + S S N K N K Sbjct: 673440 LLVNKRNRVFAGGERIKNLEKMNRNSSKNTADKNRKSKQSSSSNDKTRNNKK 673285 >gb|GG738880.1| Naegleria gruberi genomic scaffold NAEGRscaffold_36, whole genome shotgun sequence Length = 416450 Score = 30.4 bits (67), Expect = 5.0 Identities = 31/121 (25%), Positives = 53/121 (43%) Frame = -2 Query: 6 KSRIKENVKREEKVTANDEKQQADKPTEVPHSISENKKKEPNDKCLTFVVVFAAAVIAIA 65 ++ KEN K+ +T K + K T +IS+++ E + F + ++ Sbjct: 195838 QTTFKENSKKNNNLTLPLSK*NSKKMTSETDTISKDELSELKEAFCLFDLDGNGSICKKE 195659 Query: 66 LGLQVYVYSIIQENAKNAAVRQLGQHGLKLFKEYDINKDMQIDPKEFRQLYDFILSEDIL 125 L ++ Q N +L + +F D NKD +ID KEF +++ SED L Sbjct: 195658 LSQVMF-----QLNGCAPTNEELEE----MFNLVDTNKDGKIDFKEFVKVWSQQSSEDEL 195506 Query: 126 K 126 K Sbjct: 195505 K 195503 >gb|GG738848.1| Naegleria gruberi genomic scaffold NAEGRscaffold_4, whole genome shotgun sequence Length = 712659 Score = 30.0 bits (66), Expect = 6.5 Identities = 32/133 (24%), Positives = 55/133 (41%), Gaps = 6/133 (4%) Frame = -1 Query: 110 KEFRQLYDFILSEDILKASHEVEEEITKEIFDPSTDEIVQLKADMIPLVLSSMSQTNKNP 169 +E R+ + IL +S+ E +IT+E F + +L+ M N +P Sbjct: 276711 EEIRKEIEIILGPTKEWSSNSEEVQITRETFKK-----------YVKTILNRMIDHNYHP 276565 Query: 170 AFGTPLFHYSKDFSGLVAWKSVKT------EQKDLYAKEFKAFLPNNSSQLVGEPYWLIQ 223 L Y F+ ++ + ++ E+ D +++ +AFLP P +L Sbjct: 276564 TIYLTLGDY---FTNMIKY*FMENFRLQHFEKSDKKSEDREAFLP---------PVFLSV 276421 Query: 224 RPNNPEELTSNRY 236 P NP ELT Y Sbjct: 276420 EPINPNELTKKFY 276382 >gb|GG738903.1| Naegleria gruberi genomic scaffold NAEGRscaffold_59, whole genome shotgun sequence Length = 304373 Score = 29.6 bits (65), Expect = 8.5 Identities = 20/74 (27%), Positives = 38/74 (51%) Frame = -2 Query: 160 SSMSQTNKNPAFGTPLFHYSKDFSGLVAWKSVKTEQKDLYAKEFKAFLPNNSSQLVGEPY 219 + +S ++NP ++YSK S AWK +K E + + ++F N S ++G+P Sbjct: 95164 NELSTVDRNP------YYYSKVTSEKAAWKLMK-EMQTKHGQDFIELATINPSGVIGKPV 95006 Query: 220 WLIQRPNNPEELTS 233 L Q+ N ++ + Sbjct: 95005 -LPQQVNQTHDIVA 94967 >gb|GG738853.1| Naegleria gruberi genomic scaffold NAEGRscaffold_9, whole genome shotgun sequence Length = 695587 Score = 29.6 bits (65), Expect = 8.5 Identities = 12/47 (25%), Positives = 28/47 (59%) Frame = +2 Query: 107 IDPKEFRQLYDFILSEDILKASHEVEEEITKEIFDPSTDEIVQLKAD 153 +DP Q ++++ +IL +HE ++ I K++ + + E+ Q+ +D Sbjct: 145364 VDPTTIEQSFNYLTDMNILSLTHEHKDRINKQL-ESAQQELQQVSSD 145501 Database: N.gruberi/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 40,964,085 Number of sequences in database: 784 Lambda K H 0.317 0.133 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 25,522,236 Number of Sequences: 784 Number of extensions: 379734 Number of successful extensions: 2013 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 71 Number of HSP's successfully gapped in prelim test: 51 Number of HSP's that attempted gapping in prelim test: 1468 Number of HSP's gapped (non-prelim): 1230 length of query: 580 length of database: 13,654,695 effective HSP length: 107 effective length of query: 473 effective length of database: 13,570,807 effective search space: 6418991711 effective search space used: 6418991711 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 64 (29.3 bits)