TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP11000018_1.0 # gi|298231231|ref|NP_001177172.1|
selenoprotein N, 1 [Ciona intestinalis]
         (580 letters)

Database: H.arabidopsidis/genome.fa 
           5422 sequences; 67,459,135 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABWE01000089.1| Hyaloperonospora parasitica strain Emoy2 v-7....    37   0.11 

>gb|ABWE01000089.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont53.10, whole
            genome shotgun sequence
          Length = 85241

 Score = 36.6 bits (83), Expect = 0.11
 Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
 Frame = +1

Query: 225  PNNPEELTSNRYRYPIPKTKIEKLLHNLLVMFHPRPFVTMRFSPQGAAAVIR---AQNQV 281
            P   EEL ++R RYP   T    LL  L    + +   +     Q AAA+ R        
Sbjct: 9694 PVRAEELPADRKRYPTLNTAEASLLLGLFEQVYVKSRGSFSDRKQMAAAITRELFTTKWA 9873

Query: 282  YLEIVFRFHSEFQLNEPPYLPYW 304
            + EIV RF S+ +   PP L  W
Sbjct: 9874 FKEIVRRFASKHKWAHPPVLSQW 9942


  Database: H.arabidopsidis/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 67,459,135
  Number of sequences in database:  5422
  
Lambda     K      H
   0.317    0.133    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,458,673
Number of Sequences: 5422
Number of extensions: 514826
Number of successful extensions: 2259
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 80
Number of HSP's that attempted gapping in prelim test: 1955
Number of HSP's gapped (non-prelim): 524
length of query: 580
length of database: 22,486,378
effective HSP length: 111
effective length of query: 469
effective length of database: 21,884,536
effective search space: 10263847384
effective search space used: 10263847384
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 66 (30.0 bits)