TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP11000018_1.0 # gi|298231231|ref|NP_001177172.1|
selenoprotein N, 1 [Ciona intestinalis]
         (580 letters)

Database: E.siliculosus/genome.fa 
           35 sequences; 195,934,119 total letters

Searching...................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|FN649729.1| Ectocarpus siliculosus strain Ec 32, whole genom...    32   6.2  

>emb|FN649729.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence
               assembly, chromosome LG04
          Length = 5529539

 Score = 32.3 bits (72), Expect = 6.2
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +2

Query: 239     PIPKTKIEKLLHNLLVMFHPRPFVTMRFSPQGAAAVIRAQNQVYL 283
               P+PK K+ +LL  L+ + H   ++ +   PQG  AV+     V L
Sbjct: 3892403 PLPKNKLCELLQGLVQLLHREVYILLLQRPQGELAVLHRVRHVAL 3892537


  Database: E.siliculosus/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 195,934,119
  Number of sequences in database:  35
  
Lambda     K      H
   0.317    0.133    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 119,725,406
Number of Sequences: 35
Number of extensions: 1775352
Number of successful extensions: 7452
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 7306
Number of HSP's gapped (non-prelim): 704
length of query: 580
length of database: 65,311,373
effective HSP length: 118
effective length of query: 462
effective length of database: 65,307,243
effective search space: 30171946266
effective search space used: 30171946266
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 70 (31.6 bits)