TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP11000018_1.0 # gi|298231231|ref|NP_001177172.1| selenoprotein N, 1 [Ciona intestinalis] (580 letters) Database: C.parvum/genome.fa 8 sequences; 9,102,324 total letters Searching........done Score E Sequences producing significant alignments: (bits) Value gb|CM000432.1| Cryptosporidium parvum Iowa II chromosome 4, whol... 35 0.046 gb|CM000430.1| Cryptosporidium parvum Iowa II chromosome 2, whol... 32 0.51 gb|CM000433.1| Cryptosporidium parvum Iowa II chromosome 5, whol... 29 2.5 gb|CM000431.1| Cryptosporidium parvum Iowa II chromosome 3, whol... 29 3.3 gb|CM000429.1| Cryptosporidium parvum Iowa II chromosome 1, whol... 28 7.4 gb|CM000434.1| Cryptosporidium parvum Iowa II chromosome 6, whol... 27 9.6 >gb|CM000432.1| Cryptosporidium parvum Iowa II chromosome 4, whole genome shotgun sequence Length = 1104417 Score = 35.0 bits (79), Expect = 0.046 Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 7/80 (8%) Frame = +1 Query: 10 KENVKREEKVTANDEKQQADKPTEVPHSISENKKKEPN--DKCLTFVVVFAAAVIAIALG 67 +E + EE+ E++Q +K + H ENKKKE D+C F++ F + + G Sbjct: 274045 EERQEGEERQEEEQEQEQEEKESMKEHEEKENKKKEKKVIDRC--FLLAFVELIKILVEG 274218 Query: 68 -----LQVYVYSIIQENAKN 82 ++ +YSI +EN N Sbjct: 274219 DIFQYYRIRLYSIKEENNIN 274278 Score = 28.9 bits (63), Expect = 3.3 Identities = 35/142 (24%), Positives = 64/142 (45%), Gaps = 5/142 (3%) Frame = +2 Query: 433 LPFNEAFKRASVENKLIHQVVLWGALDDQSCXGSGRTLRETALESSPVIQLLNQSFISTW 492 L FNE + K + +VV + DD + L +++ + + Q+F Sbjct: 433016 LQFNEKIVINQIAVKNLLKVVELFSEDDMM--NFSKLLEHLTSKNTQISKKYTQNF--DL 433183 Query: 493 SLLKDLEVISNDKQSPLSNVANLSIEAYKFPVQMMVILPNGTVISSLNANDWL-----AQ 547 SLLK+ + N+ ++N++NLSIE K ++ +L + SLN+N + Sbjct: 433184 SLLKNYTI--NEISLIINNLSNLSIETEKNLKSLLELLLVIMKVESLNSNQMIEIDNKKD 433357 Query: 548 ANGEVPVDEKWLSLGSKDYNTF 569 +N E+ S +K+Y+ F Sbjct: 433358 SNFEIIYQLFLDSASNKNYSIF 433423 >gb|CM000430.1| Cryptosporidium parvum Iowa II chromosome 2, whole genome shotgun sequence Length = 985969 Score = 31.6 bits (70), Expect = 0.51 Identities = 15/64 (23%), Positives = 28/64 (43%) Frame = -3 Query: 118 FILSEDILKASHEVEEEITKEIFDPSTDEIVQLKADMIPLVLSSMSQTNKNPAFGTPLFH 177 F L ++ + + + + I+D V+L + + ++ SQT NP F +H Sbjct: 813038 FSLDSELQALLNSTDPDAWRTIYDQKNQTSVRLTDEDLDIIRRISSQTYANPDFDAESYH 812859 Query: 178 YSKD 181 Y D Sbjct: 812858 YEND 812847 >gb|CM000433.1| Cryptosporidium parvum Iowa II chromosome 5, whole genome shotgun sequence Length = 1080900 Score = 29.3 bits (64), Expect = 2.5 Identities = 30/133 (22%), Positives = 62/133 (46%), Gaps = 4/133 (3%) Frame = +2 Query: 93 LKLFKEYDINKDMQIDPKEFRQLYDFILSEDILKASHEVEEEITK--EIFDPSTDEIVQL 150 L++ +EYD + Q++ K+F + I+++ IL+ + EEI K ++FD + L Sbjct: 20165 LEIMREYDKSGSGQVEYKDFVE----IMTQKILE--RDPREEILKAFKLFDDDNTGKISL 20326 Query: 151 KADMIPLVLSSMSQTNKNPAFGTPLFHYSKDFSGLVAWKSVKT--EQKDLYAKEFKAFLP 208 K + V + ++ + + + KD G + + + +Q LY E + L Sbjct: 20327 K--NLRRVARELGESISDDELQAMIEEFDKDMDGEINEEEFISIMKQTSLY*VELRGILS 20500 Query: 209 NNSSQLVGEPYWL 221 N++++ Y L Sbjct: 20501 INNAEIAYFTYKL 20539 Score = 27.3 bits (59), Expect = 9.6 Identities = 10/39 (25%), Positives = 22/39 (56%) Frame = +2 Query: 53 FVVVFAAAVIAIALGLQVYVYSIIQENAKNAAVRQLGQH 91 ++ +F I I + + +Y+Y++ N +R+LGQ+ Sbjct: 607775 YI*IFMYKFIVILILINIYIYTLFIYKYTNTCIRRLGQN 607891 >gb|CM000431.1| Cryptosporidium parvum Iowa II chromosome 3, whole genome shotgun sequence Length = 1099352 Score = 28.9 bits (63), Expect = 3.3 Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 4/67 (5%) Frame = +3 Query: 82 NAAVRQLGQHGLKLFKEYDINKDMQIDPKEFRQLYDFIL----SEDILKASHEVEEEITK 137 NA Q+ ++ + ++KD+Q DP F L +IL ++D+++ +E K Sbjct: 223062 NATYNQVDSDSKLIWLNFTLSKDLQGDPNTFEYLDSYILKKENNKDLIELKFGSKEFQIK 223241 Query: 138 EIFDPST 144 ++ + T Sbjct: 223242 DLINDET 223262 >gb|CM000429.1| Cryptosporidium parvum Iowa II chromosome 1, whole genome shotgun sequence Length = 875659 Score = 27.7 bits (60), Expect = 7.4 Identities = 29/128 (22%), Positives = 54/128 (42%), Gaps = 15/128 (11%) Frame = -1 Query: 285 IVFRFHS-EFQLNEPPYLPYWFTPAQFTGRLIIARDGT------HVRGFQLYVPNNKKLN 337 I + FHS ++ + P LP ++ G IA + H + +N + N Sbjct: 695668 ITYLFHSLDYDFRKQPILPSLENRSKTVGNSSIAVTQSDHSLISHDDASLMEGGSNHQDN 695489 Query: 338 VD---MEWETNDPNAPENNMEVDIG-----FLPLMTINQTQPSSPMILNNDDGTSIDRRE 389 V WE +D N +NN+++ L + +++ P + +IL++ G +R Sbjct: 695488 VGGIRKRWEGDDDNNYKNNLDIPKNNNTKKLLDVTGVHKKSPPTKIILSSSKGRIREREF 695309 Query: 390 LIKQGKDI 397 + G DI Sbjct: 695308 DLNDGFDI 695285 Score = 27.3 bits (59), Expect = 9.6 Identities = 43/174 (24%), Positives = 77/174 (44%), Gaps = 23/174 (13%) Frame = +2 Query: 392 KQGKDIVVEFDEIQWKDDAITTQYAHGQLEKLFFPFKKVDYLP--FNEAFKRASVENKLI 449 K GKD+ + I+ +D + A +++L+ ++DY+ F + K+ + + L Sbjct: 200966 KHGKDLS---ENIKIEDYFVFFDQA---IDELYVIINEIDYILELFKDFDKQVTNKWLLK 201127 Query: 450 HQVVLWGALDDQSCXGSGRTLRETALESSPVIQLLNQSF-------ISTWSLL------- 495 ++VVL+ ++ TLR+ E+ IQ+LN S IS +SL+ Sbjct: 201128 YKVVLFILVE-------ALTLRDYYNEA---IQILNDSMQKHFPDDISLYSLIARISLQY 201277 Query: 496 -------KDLEVISNDKQSPLSNVANLSIEAYKFPVQMMVILPNGTVISSLNAN 542 L I Q P N N +I Y+F + ++ + + V +SLN N Sbjct: 201278 GNFPLVHSTLNTIEERLQHPKHNT-NFNIAHYRFTLGLLNMAQDDPVTASLNFN 201436 >gb|CM000434.1| Cryptosporidium parvum Iowa II chromosome 6, whole genome shotgun sequence Length = 1332857 Score = 27.3 bits (59), Expect = 9.6 Identities = 12/41 (29%), Positives = 25/41 (60%) Frame = +3 Query: 92 GLKLFKEYDINKDMQIDPKEFRQLYDFILSEDILKASHEVE 132 GL FK++ +++D + P E ++YD ++ + K H++E Sbjct: 420018 GLMTFKQFTLSQDDNLAPNELIEMYDSYKTKYVQK--HQLE 420134 Database: C.parvum/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 9,102,324 Number of sequences in database: 8 Lambda K H 0.317 0.133 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 5,451,770 Number of Sequences: 8 Number of extensions: 78816 Number of successful extensions: 408 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 351 Number of HSP's gapped (non-prelim): 142 length of query: 580 length of database: 3,034,108 effective HSP length: 97 effective length of query: 483 effective length of database: 3,033,332 effective search space: 1465099356 effective search space used: 1465099356 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 59 (27.3 bits)