TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP11000018_1.0 # gi|298231231|ref|NP_001177172.1|
selenoprotein N, 1 [Ciona intestinalis]
         (580 letters)

Database: C.owczarzaki/genome.fa 
           89 sequences; 28,043,798 total letters

Searching........................................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

supercontig_1.2 of Capsaspora owczarzaki ATCC 30864                    35   0.11 
supercontig_1.1 of Capsaspora owczarzaki ATCC 30864                    32   1.5  
supercontig_1.14 of Capsaspora owczarzaki ATCC 30864                   30   3.4  
supercontig_1.5 of Capsaspora owczarzaki ATCC 30864                    30   4.5  
supercontig_1.47 of Capsaspora owczarzaki ATCC 30864                   29   7.7  

>supercontig_1.2 of Capsaspora owczarzaki ATCC 30864
          Length = 2668053

 Score = 35.4 bits (80), Expect = 0.11
 Identities = 26/94 (27%), Positives = 39/94 (41%)
 Frame = -1

Query: 401     FDEIQWKDDAITTQYAHGQLEKLFFPFKKVDYLPFNEAFKRASVENKLIHQVVLWGALDD 460
               FDE QW+ D +   ++      +F   + +D   F     + S E  L H    WGA   
Sbjct: 2619039 FDEAQWQSDLLAFNHS----PSIFMATRGIDTDEFCHLLLQVSPEQPLCH----WGATGG 2618884

Query: 461     QSCXGSGRTLRETALESSPVIQLLNQSFISTWSL 494
                     G TLR  AL  +P+  L   ++  T S+
Sbjct: 2618883 GGRGEDGLTLRSGALLLTPLYSLHRHTYGMTISI 2618782


>supercontig_1.1 of Capsaspora owczarzaki ATCC 30864
          Length = 3794667

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -1

Query: 526     MMVILPNGTVISSLNANDWLAQANGEVPVDEKWLS 560
               ++V++ +G V+SS+      A   G+ P DE WLS
Sbjct: 3616194 LVVVVVDGWVVSSIGIGTGAAVGTGDAPADEFWLS 3616090



 Score = 31.2 bits (69), Expect = 2.0
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 456     GALDDQSCXGSGRTLRETALESSPVIQLLNQSFISTW 492
               G ++   C GS R  R T L  SP+  +  QS +S+W
Sbjct: 3171285 GEINRYHCAGSSRCWRPTWLHKSPIGSISEQSSLSSW 3171395



 Score = 30.8 bits (68), Expect = 2.6
 Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
 Frame = +1

Query: 4       NRKSRIKENVK-----REEKVTANDEKQQADKPTEVPHSISENKKKEPNDKCLTFVVVFA 58
               N+  + ++++K      E+K T N +++Q +K T    + ++NK++ P   C   +  FA
Sbjct: 1275904 NKSKKAEQSIK*KKPQHEQKQTENRKQKQTNKQTNKQKTKTQNKQQHPASSCPFSLNPFA 1276083

Query: 59      A 59
               A
Sbjct: 1276084 A 1276086


>supercontig_1.14 of Capsaspora owczarzaki ATCC 30864
          Length = 919646

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -3

Query: 220    WLIQRPNNPEELTSNRYRYP-IPKTKIEKLLHNLLVMFHPRPFVTMRF 266
              WL+ R   P  L SNRYR+  +P+ +     H  L   HPR    +RF
Sbjct: 559689 WLLPRARLPTSLASNRYRWQRVPRPR----WHLRLAEPHPRQTSLLRF 559558


>supercontig_1.5 of Capsaspora owczarzaki ATCC 30864
          Length = 1755934

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
 Frame = -1

Query: 3       RNRKSRIKENVKREEKVTANDEKQQADKPTEV---PHSISENKKKEPNDKC 50
               R R+ R +E  +   +     ++++A + +     PHSI++ KKK+ N KC
Sbjct: 1070710 RRRQCRERERRRESSRRERKKQRREALRSSTT*IQPHSITKKKKKKNNKKC 1070558



 Score = 30.0 bits (66), Expect = 4.5
 Identities = 30/113 (26%), Positives = 44/113 (38%), Gaps = 8/113 (7%)
 Frame = +1

Query: 211    SSQLVGEPYWLIQRPNNPEE-----LTSNRY---RYPIPKTKIEKLLHNLLVMFHPRPFV 262
              SSQ V  P+   +RP +P       ++S R    R P P  ++    ++L+ + H  P  
Sbjct: 936142 SSQSVLFPFSSTRRP*SPPPPPPPLVSSTRRCCCRRP-PHRRLPHYSYDLIFIAHSLPAA 936318

Query: 263    TMRFSPQGAAAVIRAQNQVYLEIVFRFHSEFQLNEPPYLPYWFTPAQFTGRLI 315
                R+         R      L I   FH    L  PP LP + T A    R +
Sbjct: 936319 VARYPIASCLVPTRRARLPSLAISIHFHHHLLLPHPPCLPPFSTVASSPRRCV 936477


>supercontig_1.47 of Capsaspora owczarzaki ATCC 30864
          Length = 8449

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +3

Query: 220  WLIQRPNNPEELTSNRYRYP-IPKTKIEKLLHNLLVMFHPRPFVTMRF 266
            WL+ R   P  L +NRYR+  +P+ +     H  L   HPR    +RF
Sbjct: 7092 WLLPRARLPTSLANNRYRWQRVPRPR----WHLRLAEPHPRQTSLLRF 7223


  Database: C.owczarzaki/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 28,043,798
  Number of sequences in database:  89
  
Lambda     K      H
   0.317    0.133    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,732,796
Number of Sequences: 89
Number of extensions: 234583
Number of successful extensions: 1328
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1134
Number of HSP's gapped (non-prelim): 474
length of query: 580
length of database: 9,347,932
effective HSP length: 105
effective length of query: 475
effective length of database: 9,338,587
effective search space: 4435828825
effective search space used: 4435828825
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)