TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP11000018_1.0 # gi|298231231|ref|NP_001177172.1| selenoprotein N, 1 [Ciona intestinalis] (580 letters) Database: C.muris/genome.fa 84 sequences; 9,245,251 total letters Searching...................................................................................done Score E Sequences producing significant alignments: (bits) Value gb|DS989740.1| Cryptosporidium muris RN66 scf_1106632353993 geno... 32 0.40 gb|DS989728.1| Cryptosporidium muris RN66 scf_1106632373407 geno... 29 3.3 gb|DS989744.1| Cryptosporidium muris RN66 scf_1106632354003 geno... 28 4.4 gb|DS989731.1| Cryptosporidium muris RN66 scf_1106632373451 geno... 28 4.4 gb|DS989736.1| Cryptosporidium muris RN66 scf_1106632373433 geno... 28 7.5 >gb|DS989740.1| Cryptosporidium muris RN66 scf_1106632353993 genomic scaffold, whole genome shotgun sequence Length = 196818 Score = 32.0 bits (71), Expect = 0.40 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%) Frame = -3 Query: 71 YVYSIIQENAKNAAVRQLGQHGLKLFKEYDINKDMQIDPKEFRQL-YDFILSEDILKASH 129 ++Y E+ ++ L ++LF E D+NKD ++ E+ L +D+ LS + K H Sbjct: 83185 FIYHFSPESQRDEEDDGLYDFYIRLFSEMDLNKDSVLEINEYYNLVHDYTLSGEFYKRIH 83006 >gb|DS989728.1| Cryptosporidium muris RN66 scf_1106632373407 genomic scaffold, whole genome shotgun sequence Length = 965821 Score = 28.9 bits (63), Expect = 3.3 Identities = 19/52 (36%), Positives = 26/52 (50%) Frame = -3 Query: 95 LFKEYDINKDMQIDPKEFRQLYDFILSEDILKASHEVEEEITKEIFDPSTDE 146 LF EYD + + +D EFR L +L IL H++ EE E + T E Sbjct: 421649 LFSEYDKDNNAALDYTEFRSLLSQLL---ILPELHDLFEEYKDETTNVVTAE 421503 >gb|DS989744.1| Cryptosporidium muris RN66 scf_1106632354003 genomic scaffold, whole genome shotgun sequence Length = 24307 Score = 28.5 bits (62), Expect = 4.4 Identities = 11/21 (52%), Positives = 15/21 (71%) Frame = +3 Query: 343 ETNDPNAPENNMEVDIGFLPL 363 ETN PN P NN+ +IG +P+ Sbjct: 3672 ETNFPNFPPNNLNFNIGNIPI 3734 >gb|DS989731.1| Cryptosporidium muris RN66 scf_1106632373451 genomic scaffold, whole genome shotgun sequence Length = 589013 Score = 28.5 bits (62), Expect = 4.4 Identities = 35/173 (20%), Positives = 68/173 (39%), Gaps = 7/173 (4%) Frame = -1 Query: 403 EIQWKDDAITTQYAHGQLEKLFFPFKKVDYLPFNEAFKRASVENKLIHQ--VVLWGALDD 460 ++Q D+A + G+ K + D K ++ + KL+ + + L +++ Sbjct: 358781 DMQKLDEAFKEKVTEGESNKNIISMIEQDNKHLTNRLKESNEQVKLLRERVITLTSTIEE 358602 Query: 461 QSCXGSGRTLRETALESSPVIQLLNQSFISTWSLLKDLEVISNDKQSPLSNVANLSIEAY 520 + L SSP+ Q L + + DLE S+D + L N+A + Sbjct: 358601 NNTT--------KFLTSSPIYQKLESEKVKLEKKVADLETKSDDLRK-LLNIAEKKLHDI 358449 Query: 521 KFPVQMMVILPNGTVISSLNANDWLAQANGEVPVDEKWL-----SLGSKDYNT 568 + + P G I +N+ L + ++ + K L +L K +NT Sbjct: 358448 SHKQSVDALWPRGESIRG-GSNEDLVEMLKKIDPESKTLQSIAENLIQKTHNT 358293 Score = 28.1 bits (61), Expect = 5.7 Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 2/73 (2%) Frame = -2 Query: 98 EYDINKDMQIDPKEFRQLYDFILSEDILKASHEVEEEITKEIFDPSTDEIVQLKADMIPL 157 +YDI+K+ D + L D IL ED+ +E E + D + E ++ K D + + Sbjct: 339439 KYDIDKNKDQDLEYKDYLKDKILREDL----NEDEMRYLMKYIDAPSIERIKSKIDFLEV 339272 Query: 158 VLSSM--SQTNKN 168 L + ++TNKN Sbjct: 339271 QLQVLYDNRTNKN 339233 Score = 27.3 bits (59), Expect = 9.7 Identities = 12/31 (38%), Positives = 18/31 (58%) Frame = +2 Query: 484 LNQSFISTWSLLKDLEVISNDKQSPLSNVAN 514 LN +IS W +LKD+E +S Q + A+ Sbjct: 7463 LNDCYISKWPILKDIEGVSQRIQEDCRDFAS 7555 Score = 27.3 bits (59), Expect = 9.7 Identities = 14/41 (34%), Positives = 19/41 (46%) Frame = -3 Query: 278 QNQVYLEIVFRFHSEFQLNEPPYLPYWFTPAQFTGRLIIAR 318 Q +VY ++ RFH + EP A +T L IAR Sbjct: 140247 QGEVYPQVYTRFHMQIHRREPNLASSLMREAYYTNTLGIAR 140125 >gb|DS989736.1| Cryptosporidium muris RN66 scf_1106632373433 genomic scaffold, whole genome shotgun sequence Length = 367275 Score = 27.7 bits (60), Expect = 7.5 Identities = 19/54 (35%), Positives = 25/54 (46%) Frame = +2 Query: 194 EQKDLYAKEFKAFLPNNSSQLVGEPYWLIQRPNNPEELTSNRYRYPIPKTKIEK 247 + DL+ F NN +L EP + P E L S YPI KTK+E+ Sbjct: 274142 QNDDLHILRPLKFPTNNVIRLACEPVNPSELPKMLEGLKSLDKAYPILKTKVEE 274303 Score = 27.3 bits (59), Expect = 9.7 Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 2/61 (3%) Frame = +1 Query: 93 LKLFKEYDINKDMQIDPKEFRQLYDFILSEDILKASHEVEEEITK--EIFDPSTDEIVQL 150 L++ +EYD N +D K+F + I+++ IL+ + +EEI K ++FD + L Sbjct: 203503 LEIMREYDKNGSGYVDYKDFME----IMTQKILE--RDPKEEILKAFKLFDDDNTGKISL 203664 Query: 151 K 151 K Sbjct: 203665 K 203667 Database: C.muris/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 9,245,251 Number of sequences in database: 84 Lambda K H 0.317 0.133 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 5,293,498 Number of Sequences: 84 Number of extensions: 74110 Number of successful extensions: 372 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 7 Number of HSP's that attempted gapping in prelim test: 283 Number of HSP's gapped (non-prelim): 211 length of query: 580 length of database: 3,081,750 effective HSP length: 97 effective length of query: 483 effective length of database: 3,073,602 effective search space: 1484549766 effective search space used: 1484549766 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 59 (27.3 bits)