TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP11000018_1.0 # gi|298231231|ref|NP_001177172.1|
selenoprotein N, 1 [Ciona intestinalis]
         (580 letters)

Database: C.merolae/genome.fa 
           20 sequences; 16,546,747 total letters

Searching....................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|AP006497.2| Cyanidioschyzon merolae DNA, chromosome 15, comp...    30   2.0  

>dbj|AP006497.2| Cyanidioschyzon merolae DNA, chromosome 15, complete genome, complete
              sequence
          Length = 902900

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
 Frame = -3

Query: 264    MRFSPQGAAAVIRAQNQVYLEIVF---RFHSEFQLNEPPYLPYWFTPAQFTGRLII 316
              +RF   G  A   A   +   + F    F + FQ+   P + +W  P+QF+G L+I
Sbjct: 403455 LRFLVSGVGAYGGAVEDLIESVAFINPSFDTSFQVLRFPTVAFWCQPSQFSGSLLI 403288



 Score = 30.0 bits (66), Expect = 2.7
 Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
 Frame = +2

Query: 210   NSSQLVGEPYWLIQR-----PNNPEELTSNRYRYPIPK 242
             N     GEP  +  R     P  P EL+S RYR PIPK
Sbjct: 13913 NMKSTSGEPERIASR*RQIPPAVPRELSSRRYRTPIPK 14026


  Database: C.merolae/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 16,546,747
  Number of sequences in database:  20
  
Lambda     K      H
   0.317    0.133    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,357,943
Number of Sequences: 20
Number of extensions: 125031
Number of successful extensions: 583
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 570
Number of HSP's gapped (non-prelim): 27
length of query: 580
length of database: 5,515,582
effective HSP length: 101
effective length of query: 479
effective length of database: 5,513,562
effective search space: 2640996198
effective search space used: 2640996198
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)