TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP11000018_1.0 # gi|298231231|ref|NP_001177172.1|
selenoprotein N, 1 [Ciona intestinalis]
         (580 letters)

Database: A.taiwanensis/genome.fa 
           5379 sequences; 6,149,411 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABJQ01002981.1| Ascogregarina taiwanensis Contig3310, whole g...    28   2.2  

>gb|ABJQ01002981.1| Ascogregarina taiwanensis Contig3310, whole genome shotgun sequence
          Length = 2741

 Score = 28.5 bits (62), Expect = 2.2
 Identities = 16/68 (23%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
 Frame = -3

Query: 205  AFLPNNSSQLVGEPYWL--IQRPNNPEELTSNRYRYPIPKTKIEKLLHNLLVMFHPRPFV 262
            + +PN +S  +    W+  ++R ++ ++L      +P   T+  +   ++   F+P PF+
Sbjct: 1941 SIVPN*TSSAICADQWITTLRRRHDVQQLL----HFPRLPTRNNQKPEDVTGQFYPLPFL 1774

Query: 263  TMRFSPQG 270
            TM+ +P G
Sbjct: 1773 TMKATPHG 1750


  Database: A.taiwanensis/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 6,149,411
  Number of sequences in database:  5379
  
Lambda     K      H
   0.317    0.133    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,620,838
Number of Sequences: 5379
Number of extensions: 48808
Number of successful extensions: 211
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of query: 580
length of database: 2,049,803
effective HSP length: 92
effective length of query: 488
effective length of database: 1,554,935
effective search space: 758808280
effective search space used: 758808280
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)