TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000009_1.0 # Protein # Glutathione peroxidase 6 (GPx6) # Homo sapiens # Complete (221 letters) Database: T.trahens/genome.fa 131 sequences; 28,680,627 total letters Searching.................................................................done Score E Sequences producing significant alignments: (bits) Value gb|GL349469.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 133 1e-31 gb|GL349472.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 64 1e-10 gb|GL349489.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 60 1e-09 gb|GL349444.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 54 1e-07 gb|GL349473.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 49 3e-06 gb|GL349433.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 28 6.0 gb|GL349486.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 27 7.9 >gb|GL349469.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.37, whole genome shotgun sequence Length = 357088 Score = 133 bits (334), Expect = 1e-31 Identities = 80/191 (41%), Positives = 107/191 (56%), Gaps = 4/191 (2%) Frame = +2 Query: 30 VDCNKGVTGTIYEYGALTLNGEEYIQFKQFAGKHVLFVNVAAYUGLAA-QYPELNALQEE 88 +D N TG + Y + ++G Y F Q GK VL VNVA+Y GL Y LN+L + Sbjct: 86411 IDIN--TTGDFFSYSSTDIHGNTY-DFSQLKGKVVLAVNVASY*GLTIPNYNALNSLMTK 86581 Query: 89 LKNFGVIVLAFPCNQFGKQEPG-TNSEILLGLKYVCPGSGFVPSFQLFEKGDVNGEKEQK 147 N G V+ FPC QF Q+P T+ +IL GLKYV PG GFV +F L K DVNG Sbjct: 86582 YANRGFTVIGFPCAQFDNQQPEFTSQQILDGLKYVRPGGGFVANFPLMAKSDVNGASRSP 86761 Query: 148 VFTFLKNSCP-PTSDLLGSSSQLFWEPMKVHDIRWNFEKFLVGPD-GVPVMHWFHQAPVS 205 V+ +L +CP P L S++ + W P++ DI WNF+K+L+ PD G PV + S Sbjct: 86762 VYAYLTGACPQPMPILEPSTAYISWAPIRPTDITWNFQKYLIHPDTGRPVSVYSPDTLPS 86941 Query: 206 TVKSDILEYLK 216 + +DI LK Sbjct: 86942 DIAADIEALLK 86974 >gb|GL349472.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.40, whole genome shotgun sequence Length = 338342 Score = 63.5 bits (153), Expect = 1e-10 Identities = 50/168 (29%), Positives = 76/168 (45%), Gaps = 4/168 (2%) Frame = -2 Query: 39 TIYEYGALTLNGEEYIQFKQFAGKHVLFVNVAAYUGLA-AQYPELNALQEELKNFGVIVL 97 T+Y++ TL E + F GK V+ NVA++ GL ++Y L L G++++ Sbjct: 84664 TLYDFSMDTLFHEPF-DFGALRGKVVIVTNVASF*GLTESRYKGLVDLHNRFHEQGLVIV 84488 Query: 98 AFPCNQFGKQEP---GTNSEILLGLKYVCPGSGFVPSFQLFEKGDVNGEKEQKVFTFLKN 154 PCNQFG QEP +E++ L G F L K +VNG ++ + K+ Sbjct: 84487 GVPCNQFGNQEPFDAENPNELIAFLDDKDWGVSAAVDFLLMTKYEVNGAGAHPLYRWAKS 84308 Query: 155 SCPPTSDLLGSSSQLFWEPMKVHDIRWNFEKFLVGPDGVPVMHWFHQA 202 T LG+S I+WNF F+ G PV + +A Sbjct: 84307 QLKST---LGTS------------IKWNFTHFVFNAKGEPVRRYGRRA 84209 Score = 48.5 bits (114), Expect = 3e-06 Identities = 36/135 (26%), Positives = 65/135 (48%), Gaps = 2/135 (1%) Frame = -3 Query: 39 TIYEYGALTLNGEEYIQFKQFAGKHVLFVNVAAYUGLA-AQYPELNALQEELKNFGVIVL 97 ++Y++ TL+G+ Y F GK V+ N+ LA +++ +L A+ E G+IVL Sbjct: 82605 SLYQFEMTTLDGDAY-DFSALHGKVVIVTNIGTRSKLAESRFLQLQAIHELYSEQGLIVL 82429 Query: 98 AFPCN-QFGKQEPGTNSEILLGLKYVCPGSGFVPSFQLFEKGDVNGEKEQKVFTFLKNSC 156 P +F EP + +EI + + +FQL + VNG +F ++K+ Sbjct: 82428 GVPSTGEFDAAEPSSAAEIR------SIANSYGVTFQLLQAAAVNGSDAHPLFAWIKDK- 82270 Query: 157 PPTSDLLGSSSQLFW 171 S ++G + + W Sbjct: 82269 --ASSMVGKAFKAPW 82231 >gb|GL349489.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.57, whole genome shotgun sequence Length = 255174 Score = 59.7 bits (143), Expect = 1e-09 Identities = 49/156 (31%), Positives = 70/156 (44%), Gaps = 1/156 (0%) Frame = +2 Query: 38 GTIYEYGALTLNGEEYIQFKQFAGKHVLFVNVAAYUGLAA-QYPELNALQEELKNFGVIV 96 G ++ G+ +NG E + +AG VL VNVA+ GL Y L L +I Sbjct: 241556 GGLFAAGSFAMNGREVL-LSSYAGSPVLVVNVASECGLTEYMYTRLVRLARAAPQLRII- 241729 Query: 97 LAFPCNQFGKQEPGTNSEILLGLKYVCPGSGFVPSFQLFEKGDVNGEKEQKVFTFLKNSC 156 FP N+FG QEP ++S I + + + +F L +K +VNG + VF +L Sbjct: 241730 -GFPSNEFGGQEPRSSSAIRAEM-----AAAYRVTFPLADKIEVNGARAHPVFKWL---- 241879 Query: 157 PPTSDLLGSSSQLFWEPMKVHDIRWNFEKFLVGPDG 192 + S + DI WNF FLV DG Sbjct: 241880 -----VAESGGE---------DIAWNFTVFLVNGDG 241945 >gb|GL349444.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.12, whole genome shotgun sequence Length = 562821 Score = 53.5 bits (127), Expect = 1e-07 Identities = 39/115 (33%), Positives = 56/115 (48%) Frame = +1 Query: 103 QFGKQEPGTNSEILLGLKYVCPGSGFVPSFQLFEKGDVNGEKEQKVFTFLKNSCPPTSDL 162 QFG QEPGTN EI L++V + + F LF+K DVNG ++ +LK Sbjct: 515614 QFGGQEPGTNEEI---LEFV---ARYNVQFPLFDKIDVNGSNAAPLYRYLK--------- 515748 Query: 163 LGSSSQLFWEPMKVHDIRWNFEKFLVGPDGVPVMHWFHQAPVSTVKSDILEYLKQ 217 SS LF + ++WNFE F+V DG V +++ DI+ L + Sbjct: 515749 -AQSSTLF-----MTRVKWNFETFVVDADGHVVSRHLPTVSPLSLEDDIVRLLDE 515895 Score = 40.4 bits (93), Expect = 0.001 Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 1/65 (1%) Frame = +2 Query: 39 TIYEYGALTLNGEEYIQFKQFAGKHVLFVNVAAYUGLA-AQYPELNALQEELKNFGVIVL 97 +IY++ ++GEE I + +L NVA+ GL A+Y +L L E+L++ +L Sbjct: 514934 SIYDFTVKDIHGEE-ISLATYKDTVLLITNVASK*GLTDARYTQLVTLHEKLRDRNFNIL 515110 Query: 98 AFPCN 102 AFPCN Sbjct: 515111 AFPCN 515125 >gb|GL349473.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.41, whole genome shotgun sequence Length = 350512 Score = 48.9 bits (115), Expect = 3e-06 Identities = 35/103 (33%), Positives = 49/103 (47%), Gaps = 6/103 (5%) Frame = +2 Query: 103 QFGKQEPGTNSEILLGLKYVCPGSGFVPSFQLFEKGDVNGEK-----EQKVFTFLKNSCP 157 Q G QE + EIL +YV PG+G+ P+F + K DV G E LK P Sbjct: 32105 QHGLQENARDVEILNMYRYVRPGNGYEPNFPITTKMDVVGPNGGLMAELAAQLPLKPENP 32284 Query: 158 PTSDLLGSS-SQLFWEPMKVHDIRWNFEKFLVGPDGVPVMHWF 199 L+ ++ L + + I WNF LVGPDG P+ ++ Sbjct: 32285 NRRYLVDTTPCGLKTKKVSSKTIEWNFGMILVGPDGTPLKRYY 32413 Score = 33.5 bits (75), Expect = 0.11 Identities = 20/41 (48%), Positives = 24/41 (58%), Gaps = 1/41 (2%) Frame = +1 Query: 64 VLFVNVAAYUGLAA-QYPELNALQEELKNFGVIVLAFPCNQ 103 VL VN+AA GL A Q P+LN LQ ++ V A P NQ Sbjct: 31657 VLLVNIAAL*GLTAEQMPQLNELQTMFEDHPFTVWAIPANQ 31779 >gb|GL349433.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.1, whole genome shotgun sequence Length = 716227 Score = 27.7 bits (60), Expect = 6.0 Identities = 13/22 (59%), Positives = 14/22 (63%) Frame = -2 Query: 164 GSSSQLFWEPMKVHDIRWNFEK 185 GS+SQLFW P K DI W K Sbjct: 379674 GSTSQLFW*P-KAFDIEWEASK 379612 >gb|GL349486.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.54, whole genome shotgun sequence Length = 279941 Score = 27.3 bits (59), Expect = 7.9 Identities = 12/25 (48%), Positives = 18/25 (72%) Frame = -2 Query: 76 AAQYPELNALQEELKNFGVIVLAFP 100 A+ PEL A+ +EL++ G+ VLA P Sbjct: 37279 ASHIPELEAMWQELRSKGLFVLASP 37205 Database: T.trahens/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 28,680,627 Number of sequences in database: 131 Lambda K H 0.322 0.139 0.433 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 7,445,427 Number of Sequences: 131 Number of extensions: 107069 Number of successful extensions: 305 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 283 Number of HSP's gapped (non-prelim): 30 length of query: 221 length of database: 9,560,209 effective HSP length: 95 effective length of query: 126 effective length of database: 9,547,764 effective search space: 1203018264 effective search space used: 1203018264 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 58 (26.9 bits)