TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000009_1.0 # Protein # Glutathione peroxidase 6 (GPx6) # Homo sapiens # Complete (221 letters) Database: P.ultimum/genome.fa 82 sequences; 42,801,618 total letters Searching.................................................................................done Score E Sequences producing significant alignments: (bits) Value gb|GL376611.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 116 2e-26 gb|GL376564.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 110 8e-25 gb|GL376617.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 59 5e-09 gb|GL376629.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 55 7e-08 gb|GL376628.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 28 8.8 >gb|GL376611.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582014, whole genome shotgun sequence Length = 494327 Score = 116 bits (290), Expect = 2e-26 Identities = 72/221 (32%), Positives = 106/221 (47%), Gaps = 39/221 (17%) Frame = +2 Query: 39 TIYEYGALTLNGEEYIQFKQFAGKHVLFVNVAAYUGLAAQ-YPELNALQEELKNFGVIVL 97 T++++ +L G EYI+ +AGK +L VNVA++ + Y ++N L E+ + ++++ Sbjct: 346700 TVHQFSFRSLTGGEYIRLADYAGKVILLVNVASHCNSTTKAYTQMNELAEKYPD--LVII 346873 Query: 98 AFPCNQFGKQEPGTNSEILLGLKYVCPGSGFVPSFQLFEKGDVNGEKEQKVFTFLKNSCP 157 PCNQFG QE EI LK++ PG GF P F+L EK +VNG VF FLK S P Sbjct: 346874 GCPCNQFGHQENLNGEEIYTSLKHIRPGKGFEPKFKLTEKMEVNGANAHAVFNFLKLSLP 347053 Query: 158 PTSD------------LLGSSSQLFWEPMKVHDIRWNFEK-------------------- 185 +D + +L W P+ D+ WNFEK Sbjct: 347054 YPADRTLMDEMSSPSGVFSHPMRLIWMPVSRADLSWNFEKVCILVFFIGHHVFGVRRR*F 347233 Query: 186 ------FLVGPDGVPVMHWFHQAPVSTVKSDILEYLKQFNT 220 FL+GPDGVP + + ++ DI E L + T Sbjct: 347234 LLCMLQFLIGPDGVPFKRFSPKLDFKSISDDI-ELLMKMET 347353 >gb|GL376564.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875581313, whole genome shotgun sequence Length = 1115623 Score = 110 bits (276), Expect = 8e-25 Identities = 73/182 (40%), Positives = 101/182 (55%), Gaps = 1/182 (0%) Frame = -1 Query: 39 TIYEYGALTLNGEEYIQFKQFAGKHVLFVNVAAYUGLAAQ-YPELNALQEELKNFGVIVL 97 +IY++ L ++G + F ++ GK +L VNVA+ LA+ YP+L L E+ +N G VL Sbjct: 429976 SIYQFMDLDIHGNP-VSFDKYRGKVLLIVNVASGCKLASHNYPQLTHLHEKYRNQGFEVL 429800 Query: 98 AFPCNQFGKQEPGTNSEILLGLKYVCPGSGFVPSFQLFEKGDVNGEKEQKVFTFLKNSCP 157 AFPCNQFG +EP N EI ++YV S F +++LFEK DVNG + VFTFLK P Sbjct: 429799 AFPCNQFGSEEPRNNEEI---VQYV---SQFNANYELFEKADVNGSHARPVFTFLKAKLP 429638 Query: 158 PTSDLLGSSSQLFWEPMKVHDIRWNFEKFLVGPDGVPVMHWFHQAPVSTVKSDILEYLKQ 217 T GS ++WNF KFLV +GVP + + ++ DI E L Sbjct: 429637 GT---FGSF------------VKWNFTKFLVDRNGVPYKRFSPKDSPFDLEDDIQELLNS 429503 Query: 218 FN 219 N Sbjct: 429502 RN 429497 Score = 110 bits (275), Expect = 1e-24 Identities = 66/157 (42%), Positives = 89/157 (56%), Gaps = 1/157 (0%) Frame = -2 Query: 39 TIYEYGALTLNGEEYIQFKQFAGKHVLFVNVAAYUGLA-AQYPELNALQEELKNFGVIVL 97 +IYE ++G E I F ++ GK +L VNV++ GL YPEL AL E+ ++ G+++L Sbjct: 433950 SIYELKDTDISGTE-ITFDKYKGKVLLVVNVSSNCGLTPTNYPELTALDEKYRDQGLVIL 433774 Query: 98 AFPCNQFGKQEPGTNSEILLGLKYVCPGSGFVPSFQLFEKGDVNGEKEQKVFTFLKNSCP 157 AFPCNQFG QEPGTN EI+ +K + +Q FEK DVNG + VF +LK P Sbjct: 433773 AFPCNQFGSQEPGTNEEIVEFVKQ------YNAQYQFFEKADVNGPHARPVFAYLKAKLP 433612 Query: 158 PTSDLLGSSSQLFWEPMKVHDIRWNFEKFLVGPDGVP 194 T + I+WNF KFLV +GVP Sbjct: 433611 GTFG---------------NYIKWNFTKFLVDRNGVP 433546 Score = 109 bits (272), Expect = 2e-24 Identities = 69/178 (38%), Positives = 95/178 (53%), Gaps = 1/178 (0%) Frame = -1 Query: 39 TIYEYGALTLNGEEYIQFKQFAGKHVLFVNVAAYUGLA-AQYPELNALQEELKNFGVIVL 97 +IYE ++G E I F ++ GK +L VNV++ GL YPEL AL E+ ++ G+++L Sbjct: 420034 SIYELKDTDISGTE-ITFDKYKGKVLLVVNVSSNCGLTPTNYPELTALDEKYRDQGLVIL 419858 Query: 98 AFPCNQFGKQEPGTNSEILLGLKYVCPGSGFVPSFQLFEKGDVNGEKEQKVFTFLKNSCP 157 AFPCNQFG QEPGTN EI+ +K + +Q FEK DVNG + VF +LK P Sbjct: 419857 AFPCNQFGSQEPGTNEEIVEFVKQ------YNAQYQFFEKADVNGPHARPVFAYLKAKLP 419696 Query: 158 PTSDLLGSSSQLFWEPMKVHDIRWNFEKFLVGPDGVPVMHWFHQAPVSTVKSDILEYL 215 T + I+WNF KFLV +G P + + + DI E L Sbjct: 419695 GTFG---------------NYIKWNFTKFLVDRNGQPFKRFAPTDKPLSFEHDIQELL 419567 Score = 99.8 bits (247), Expect = 2e-21 Identities = 66/178 (37%), Positives = 94/178 (52%), Gaps = 1/178 (0%) Frame = -2 Query: 39 TIYEYGALTLNGEEYIQFKQFAGKHVLFVNVAAYUGLAAQ-YPELNALQEELKNFGVIVL 97 +IY++ + + G + F ++ GK +LFVNVA+ LA Q YPEL+ L + + G VL Sbjct: 423714 SIYQFMDVNIYGNP-VSFDKYRGKVLLFVNVASNSKLAPQNYPELSMLYQRYCDQGFEVL 423538 Query: 98 AFPCNQFGKQEPGTNSEILLGLKYVCPGSGFVPSFQLFEKGDVNGEKEQKVFTFLKNSCP 157 AFPCNQF +EPGT +I L+YV F ++Q FEK DVNG + VFT+LK P Sbjct: 423537 AFPCNQFRSEEPGTTEQI---LEYV---KQFNANYQFFEKADVNGAHARPVFTYLKAKLP 423376 Query: 158 PTSDLLGSSSQLFWEPMKVHDIRWNFEKFLVGPDGVPVMHWFHQAPVSTVKSDILEYL 215 + ++WNF KFLV +G+P + ++ DI E L Sbjct: 423375 GKFG---------------NYVKWNFTKFLVDRNGMPYKRYAPTDSPLALEQDIQELL 423247 Score = 98.6 bits (244), Expect = 4e-21 Identities = 66/181 (36%), Positives = 93/181 (51%), Gaps = 2/181 (1%) Frame = +3 Query: 39 TIYEYGALTLNGEEYIQFKQFAGKHVLFVNVAAYUGLA-AQYPELNALQEELKNFGVIVL 97 +IYE + G E + +++ GK +L VNV++ GL YPEL L ++ ++ G+ +L Sbjct: 442560 SIYELKDYDMQGNE-VSMEKYKGKVLLVVNVSSLCGLTPTNYPELAELDKKYRDQGLEIL 442736 Query: 98 AFPCNQFGKQEPGTNSEIL-LGLKYVCPGSGFVPSFQLFEKGDVNGEKEQKVFTFLKNSC 156 AFPCNQF QEPGT+ EI+ KY C F FEK DVNG + VFT+LK Sbjct: 442737 AFPCNQFSNQEPGTHEEIMEFVKKYNC-------EFPFFEKHDVNGASARPVFTYLKAKL 442895 Query: 157 PPTSDLLGSSSQLFWEPMKVHDIRWNFEKFLVGPDGVPVMHWFHQAPVSTVKSDILEYLK 216 P GS ++WNF KFLV +G P + + + + DI L+ Sbjct: 442896 P------GSFGNF---------VKWNFTKFLVDRNGQPYKRFAPKDLPFSFEDDIKALLE 443030 Query: 217 Q 217 Q Sbjct: 443031 Q 443033 Score = 98.6 bits (244), Expect = 4e-21 Identities = 66/181 (36%), Positives = 93/181 (51%), Gaps = 2/181 (1%) Frame = -3 Query: 39 TIYEYGALTLNGEEYIQFKQFAGKHVLFVNVAAYUGLA-AQYPELNALQEELKNFGVIVL 97 +IYE + G E + +++ GK +L VNV++ GL YPEL L ++ ++ G+ +L Sbjct: 435902 SIYELKDYDMQGNE-VSMEKYKGKVLLVVNVSSLCGLTPTNYPELAELDKKYRDQGLEIL 435726 Query: 98 AFPCNQFGKQEPGTNSEIL-LGLKYVCPGSGFVPSFQLFEKGDVNGEKEQKVFTFLKNSC 156 AFPCNQF QEPGT+ EI+ KY C F FEK DVNG + VFT+LK Sbjct: 435725 AFPCNQFASQEPGTHEEIMEFVKKYNC-------EFPFFEKHDVNGASARPVFTYLKAKL 435567 Query: 157 PPTSDLLGSSSQLFWEPMKVHDIRWNFEKFLVGPDGVPVMHWFHQAPVSTVKSDILEYLK 216 P GS ++WNF KFLV +G P + + + + DI L+ Sbjct: 435566 P------GSFGNF---------VKWNFTKFLVDRNGQPYKRFAPKDLPFSFEDDIKALLE 435432 Query: 217 Q 217 Q Sbjct: 435431 Q 435429 Score = 97.1 bits (240), Expect = 1e-20 Identities = 66/179 (36%), Positives = 93/179 (51%), Gaps = 1/179 (0%) Frame = -1 Query: 39 TIYEYGALTLNGEEYIQFKQFAGKHVLFVNVAAYUGLAAQ-YPELNALQEELKNFGVIVL 97 +IY++ ++G + F ++ GK +L VNVA+ +A +P L L E+ +N G +L Sbjct: 427222 SIYQFMDRDIHGNP-VSFDKYRGKVLLVVNVASGCKMAYHNFPALTVLHEKYRNQGFEIL 427046 Query: 98 AFPCNQFGKQEPGTNSEILLGLKYVCPGSGFVPSFQLFEKGDVNGEKEQKVFTFLKNSCP 157 AFPCNQFG +EP + EIL L S F +++LFEK DVNG + VF FLK P Sbjct: 427045 AFPCNQFGGEEPRNHEEILQYL------SQFNANYELFEKADVNGSHARPVFMFLKAKLP 426884 Query: 158 PTSDLLGSSSQLFWEPMKVHDIRWNFEKFLVGPDGVPVMHWFHQAPVSTVKSDILEYLK 216 T GS ++WNF KFLV +G P + ++ DI E LK Sbjct: 426883 GT---FGSF------------VKWNFTKFLVDRNGKPFKRFSPTDSPFELEQDIQELLK 426752 Score = 95.9 bits (237), Expect = 3e-20 Identities = 65/181 (35%), Positives = 93/181 (51%), Gaps = 2/181 (1%) Frame = -3 Query: 39 TIYEYGALTLNGEEYIQFKQFAGKHVLFVNVAAYUGLA-AQYPELNALQEELKNFGVIVL 97 +IY+ ++G+E + ++ GK +L VNV++ GL + YP L L + ++ G++VL Sbjct: 437735 SIYDLKDYDMSGQE-VPIDKYKGKVLLVVNVSSNCGLTPSNYPALVELDNKYRDQGLVVL 437559 Query: 98 AFPCNQFGKQEPGTNSEIL-LGLKYVCPGSGFVPSFQLFEKGDVNGEKEQKVFTFLKNSC 156 AFPCNQF QEPGT+ EI+ KY C F FEK DVNG K + VFT+LK Sbjct: 437558 AFPCNQFALQEPGTHEEIMEFVKKYNC-------KFPFFEKNDVNGAKARPVFTYLKAKL 437400 Query: 157 PPTSDLLGSSSQLFWEPMKVHDIRWNFEKFLVGPDGVPVMHWFHQAPVSTVKSDILEYLK 216 P GS ++WNF KFL+ G P + ++ + DI L Sbjct: 437399 PTK---FGSF------------VKWNFTKFLIDRKGQPYKRFSPYDLPTSFEDDIQLLLA 437265 Query: 217 Q 217 Q Sbjct: 437264 Q 437262 Score = 60.8 bits (146), Expect = 9e-10 Identities = 57/196 (29%), Positives = 83/196 (42%), Gaps = 3/196 (1%) Frame = -1 Query: 24 KPQNRKVDCNKGVTGTIYEYGALTLNGEEYIQFKQFAGKHVLFVNVAAYUGLAA-QYPEL 82 K NR D + Y +G+ ++ + G VL VNVA+ A QYPEL Sbjct: 402367 KEANRDHDKWASPDASFYSLTDADASGKRFLM-EDLVGSVVLVVNVASKDPQAPLQYPEL 402191 Query: 83 NALQEELKNFGVIVLAFPCNQFG--KQEPGTNSEILLGLKYVCPGSGFVPSFQLFEKGDV 140 + ++ + G VLAFP +QFG QE T+ EIL L + +F + K DV Sbjct: 402190 VTIADKYHDDGFTVLAFPSDQFGGDGQEFDTDGEILSYLV-----QAYKVNFPIMTKRDV 402026 Query: 141 NGEKEQKVFTFLKNSCPPTSDLLGSSSQLFWEPMKVHDIRWNFEKFLVGPDGVPVMHWFH 200 NG + F +L P GS WNF KFL+ G P + Sbjct: 402025 NGLDARDAFLYLNAHLP------GSFGPF---------TEWNFTKFLIDRHGKPFKRYET 401891 Query: 201 QAPVSTVKSDILEYLK 216 ++++DI + L+ Sbjct: 401890 SVLPQSLEADIRQLLE 401843 >gb|GL376617.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582020, whole genome shotgun sequence Length = 790859 Score = 58.5 bits (140), Expect = 5e-09 Identities = 48/156 (30%), Positives = 69/156 (44%), Gaps = 22/156 (14%) Frame = +1 Query: 84 ALQEELKNFGVIVLAFPCNQFGKQEPGTNSEILLGLKYVCPGSGFVPSFQLFEK------ 137 AL E+ G+ +LAFPCNQFG QE GT ++I+ ++ + +F +F K Sbjct: 515053 ALYEKYHEQGLEILAFPCNQFGSQESGTQAQIMQFVE-----EHYHVTFPVFAKVIPPRC 515217 Query: 138 ----------------GDVNGEKEQKVFTFLKNSCPPTSDLLGSSSQLFWEPMKVHDIRW 181 DVNG +FTFLK S L G + +I+W Sbjct: 515218 AQYAGELNLLTEVSP*VDVNGANAHPLFTFLK------SKLSGFITS---------NIKW 515352 Query: 182 NFEKFLVGPDGVPVMHWFHQAPVSTVKSDILEYLKQ 217 NF KFL+ DGVP + ++ DI++ L Q Sbjct: 515353 NFSKFLI-VDGVPFKRYATTTSPLAMEQDIVQALHQ 515457 >gb|GL376629.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582032, whole genome shotgun sequence Length = 863081 Score = 54.7 bits (130), Expect = 7e-08 Identities = 48/146 (32%), Positives = 61/146 (41%), Gaps = 12/146 (8%) Frame = -3 Query: 59 FAGKHVLFVNVAAYUGLAAQYPELNALQEELKNFGVIVLAFPCNQFGKQEPGTNSEILLG 118 F K VL VN A+ G Q +L L E + G++VLA P N F QE GT+ EI+ Sbjct: 591687 FKRKAVLVVNTASKCGYTPQLKQLQELHERFEAKGLVVLAVPSNDFSNQETGTDDEIV-- 591514 Query: 119 LKYVCPGSGFVPSFQLFEKGDVNGEKEQKVFTFL----KNSCPPTSD--------LLGSS 166 F SF + +K V G+ F + S PT S Sbjct: 591513 --QTYTSKEFNVSFPIAKKVHVTGDNAHAFFERIVVEYSRSVAPTYVSWQFCRWICF*SF 591340 Query: 167 SQLFWEPMKVHDIRWNFEKFLVGPDG 192 SQL M RWNF+KFL+ G Sbjct: 591339 SQLL*--MVCGFFRWNFDKFLIDHRG 591268 >gb|GL376628.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582031, whole genome shotgun sequence Length = 1316296 Score = 27.7 bits (60), Expect = 8.8 Identities = 17/50 (34%), Positives = 21/50 (42%) Frame = -2 Query: 122 VCPGSGFVPSFQLFEKGDVNGEKEQKVFTFLKNSCPPTSDLLGSSSQLFW 171 +C G GF F L +V G L T +L+ SSS LFW Sbjct: 945990 MCCGDGFAAKFALLPLSEVRGRCISMELRTLA-----TIELVSSSSSLFW 945856 Database: P.ultimum/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 42,801,618 Number of sequences in database: 82 Lambda K H 0.322 0.139 0.433 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 10,646,592 Number of Sequences: 82 Number of extensions: 145085 Number of successful extensions: 642 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 595 Number of HSP's gapped (non-prelim): 62 length of query: 221 length of database: 14,267,206 effective HSP length: 98 effective length of query: 123 effective length of database: 14,259,170 effective search space: 1753877910 effective search space used: 1753877910 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 60 (27.7 bits)