TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000009_1.0 # Protein # Glutathione peroxidase 6 (GPx6) #
Homo sapiens # Complete
         (221 letters)

Database: P.tricornutum/genome.fa 
           31 sequences; 23,733,684 total letters

Searching...............................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000620.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    79   1e-15
gb|CM000613.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    71   4e-13
gb|CM000611.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    30   1.3  
gb|CM000605.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    28   5.0  

>gb|CM000620.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 18, whole genome shotgun
              sequence
          Length = 702471

 Score = 79.3 bits (194), Expect = 1e-15
 Identities = 54/149 (36%), Positives = 73/149 (48%), Gaps = 2/149 (1%)
 Frame = +2

Query: 39     TIYEYGALTLNGEEYIQFKQFAGKHVLFVNVAAYUGLAAQ-YPELNALQEELKNFGVIVL 97
              + Y     +++GE  +    F G   L VNVA+  GL    Y +L  L +E  + G+ +L
Sbjct: 446483 SFYSCADKSMDGEA-VPMSSFEGNVCLVVNVASK*GLTKMNYTQLPQLVDEYGSRGLKIL 446659

Query: 98     AFPCNQFGKQEPGTNSEILLGL-KYVCPGSGFVPSFQLFEKGDVNGEKEQKVFTFLKNSC 156
              AFPCNQFG QEPG+  EIL  + KY             FEK DVNG   ++V+++LK +C
Sbjct: 446660 AFPCNQFGGQEPGSPEEILAFVAKY---DKEMAKKLVFFEKADVNGANTREVYSYLKKTC 446830

Query: 157    PPTSDLLGSSSQLFWEPMKVHDIRWNFEK 185
              P                    DIRWNF K
Sbjct: 446831 PNEDG--------------TTDIRWNFGK 446875


>gb|CM000613.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 10, whole genome
             shotgun sequence
          Length = 976485

 Score = 71.2 bits (173), Expect = 4e-13
 Identities = 57/170 (33%), Positives = 81/170 (47%), Gaps = 5/170 (2%)
 Frame = +2

Query: 33    NKGVTG--TIYEYGALTLNGEEYIQFKQFAGKHVLFVNVAAYUGLA-AQYPELNALQEEL 89
             ++G+ G  + ++  A  ++G   I F+ F GK  +  NVA+Y G   + Y  L  L   +
Sbjct: 34913 SEGLDGIESFFDLSAKDIDGNA-IAFESFRGKVTVLTNVASYCGYTESHYRGLVELWSVM 35089

Query: 90    KNFGVIVLAFPCNQFGKQEPGTNSEILLGLKYVCPGSGFVPSFQLFEKGDVNGEKEQKVF 149
              +  V +LAFPCNQFG QEP    +I    K      G    F++ EK +VNG    +V+
Sbjct: 35090 SDKAVEILAFPCNQFGAQEPEEADKI----KDFASSKGV--RFRIMEKINVNGPNAHQVY 35251

Query: 150   TFLK-NSCPPTSDLLGSSSQLFWEPMKVHDIRWNF-EKFLVGPDGVPVMH 197
              +LK  + PPT                   I WNF   F+VGPDGV   H
Sbjct: 35252 KYLKAQAGPPT-------------------INWNFGTYFVVGPDGVVESH 35344


>gb|CM000611.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 8, whole genome shotgun
              sequence
          Length = 1007773

 Score = 29.6 bits (65), Expect = 1.3
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = -1

Query: 59     FAGKHVLFVNVAAYUGLAAQYPELNALQEEL 89
              +AG  V+ +N+A Y G AA YP   A  EEL
Sbjct: 276331 YAGILVVHLNLAKYAGAAACYPPTRATVEEL 276239


>gb|CM000605.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 1, whole genome shotgun
              sequence
          Length = 2535400

 Score = 27.7 bits (60), Expect = 5.0
 Identities = 22/70 (31%), Positives = 27/70 (38%)
 Frame = -3

Query: 119    LKYVCPGSGFVPSFQLFEKGDVNGEKEQKVFTFLKNSCPPTSDLLGSSSQLFWEPMKVHD 178
              LKYVCP  G V +  +F  G    E E+    F        SD   S S+L         
Sbjct: 615812 LKYVCPSMGVVMASAMF-AGKELSEVERLYEVFDNQQFSQNSDYGSSGSRL--AASSAER 615642

Query: 179    IRWNFEKFLV 188
                W+FE   V
Sbjct: 615641 FSWSFESISV 615612


  Database: P.tricornutum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 23,733,684
  Number of sequences in database:  31
  
Lambda     K      H
   0.322    0.139    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,310,575
Number of Sequences: 31
Number of extensions: 92152
Number of successful extensions: 398
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 378
Number of HSP's gapped (non-prelim): 59
length of query: 221
length of database: 7,911,228
effective HSP length: 94
effective length of query: 127
effective length of database: 7,908,314
effective search space: 1004355878
effective search space used: 1004355878
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)