TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000009_1.0 # Protein # Glutathione peroxidase 6 (GPx6) #
Homo sapiens # Complete
         (221 letters)

Database: P.pallidum/genome.fa 
           42 sequences; 32,942,533 total letters

Searching..........................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL290996.1| Polysphondylium pallidum PN500 unplaced genomic s...    89   2e-18
gb|GL290984.1| Polysphondylium pallidum PN500 unplaced genomic s...    28   4.0  

>gb|GL290996.1| Polysphondylium pallidum PN500 unplaced genomic scaffold
             PPL_scaffold14, whole genome shotgun sequence
          Length = 1054919

 Score = 89.4 bits (220), Expect = 2e-18
 Identities = 50/140 (35%), Positives = 68/140 (48%), Gaps = 30/140 (21%)
 Frame = +2

Query: 83    NALQEELKNFGVIVLAFPCNQFGKQEPGTNSEILLGLKYVCPGSGFVPSFQLFEK----- 137
             N L E+      ++L FPC QF  Q PG+  EILL LKY+ PG+GF P+F +F K     
Sbjct: 66077 NDLVEKFGTTEFVILGFPCAQFMNQSPGSGDEILLTLKYIRPGNGFQPAFPMFAKVNNNN 66256

Query: 138   -----------------------GDVNGEKE--QKVFTFLKNSCPPTSDLLGSSSQLFWE 172
                                     +VNG+      VF +LK+ C P +  +  +S + W 
Sbjct: 66257 SL*N**NLILMHFQPNFLYDPLQSNVNGDPSTVNPVFNWLKSGCGPITQTILETSLISWT 66436

Query: 173   PMKVHDIRWNFEKFLVGPDG 192
             P+  +DI WNFEKFLV   G
Sbjct: 66437 PVMTNDITWNFEKFLVSKTG 66496



 Score = 58.2 bits (139), Expect = 5e-09
 Identities = 31/72 (43%), Positives = 42/72 (58%)
 Frame = +1

Query: 83    NALQEELKNFGVIVLAFPCNQFGKQEPGTNSEILLGLKYVCPGSGFVPSFQLFEKGDVNG 142
             N L E+       +L FPC+QF  Q PG++ E LL LKYV PG  FVP+F LF K  V+ 
Sbjct: 68128 NELVEKYGTEEFAILGFPCSQFMNQAPGSDQEFLLTLKYVRPGDNFVPNFLLFTK--VSF 68301

Query: 143   EKEQKVFTFLKN 154
              +++    F+ N
Sbjct: 68302 SRKEITILFILN 68337



 Score = 52.0 bits (123), Expect = 3e-07
 Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
 Frame = +2

Query: 139   DVNGEKEQ--KVFTFLKNSCPPTSDLLGSSSQLFWEPMKVHDIRWNFEKFLVGPDGVPVM 196
             +VNG+  Q   VF +L++ C  TS  +  +S + W P+  +DI WNFEKFLV   G  V 
Sbjct: 68378 NVNGDPSQISPVFQWLRSGCGATSQTIIDTSLISWTPVLTNDITWNFEKFLVSKTGQLVR 68557

Query: 197   HWFHQAPVSTVKSDILEYLK 216
              +  +     +  DI E ++
Sbjct: 68558 RYSPETFPQLLAEDIHELIE 68617


>gb|GL290984.1| Polysphondylium pallidum PN500 unplaced genomic scaffold PPL_scaffold2,
               whole genome shotgun sequence
          Length = 3242543

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 31/112 (27%), Positives = 48/112 (42%)
 Frame = -2

Query: 49      NGEEYIQFKQFAGKHVLFVNVAAYUGLAAQYPELNALQEELKNFGVIVLAFPCNQFGKQE 108
               N EE +QFK+F+     FVN++ +  LA         Q +L  F +     P N +    
Sbjct: 3098818 NNEEILQFKEFSS----FVNISFWHELA---------QMKLDVFKLSDKEVPINAYYSYS 3098678

Query: 109     PGTNSEILLGLKYVCPGSGFVPSFQLFEKGDVNGEKEQKVFTFLKNSCPPTS 160
                    +  L L+Y    + F PS    +  D++ +KEQ+   F     PP S
Sbjct: 3098677 QAAQLDPYLCLEY----NAFQPS--SLDIKDLSLDKEQRPLLF---KAPPKS 3098549


  Database: P.pallidum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 32,942,533
  Number of sequences in database:  42
  
Lambda     K      H
   0.322    0.139    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,248,765
Number of Sequences: 42
Number of extensions: 112983
Number of successful extensions: 386
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 373
Number of HSP's gapped (non-prelim): 51
length of query: 221
length of database: 10,980,844
effective HSP length: 96
effective length of query: 125
effective length of database: 10,976,812
effective search space: 1372101500
effective search space used: 1372101500
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)