TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000009_1.0 # Protein # Glutathione peroxidase 6 (GPx6) # Homo sapiens # Complete (221 letters) Database: N.gruberi/genome.fa 784 sequences; 40,964,085 total letters Searching....................................................done Score E Sequences producing significant alignments: (bits) Value gb|GG738879.1| Naegleria gruberi genomic scaffold NAEGRscaffold_... 95 6e-20 gb|GG738848.1| Naegleria gruberi genomic scaffold NAEGRscaffold_... 93 2e-19 gb|GG738855.1| Naegleria gruberi genomic scaffold NAEGRscaffold_... 69 3e-12 gb|GG738908.1| Naegleria gruberi genomic scaffold NAEGRscaffold_... 65 6e-11 gb|GG738853.1| Naegleria gruberi genomic scaffold NAEGRscaffold_... 45 3e-09 gb|GG738888.1| Naegleria gruberi genomic scaffold NAEGRscaffold_... 55 6e-08 >gb|GG738879.1| Naegleria gruberi genomic scaffold NAEGRscaffold_35, whole genome shotgun sequence Length = 384281 Score = 94.7 bits (234), Expect = 6e-20 Identities = 58/154 (37%), Positives = 79/154 (51%) Frame = +2 Query: 39 TIYEYGALTLNGEEYIQFKQFAGKHVLFVNVAAYUGLAAQYPELNALQEELKNFGVIVLA 98 ++Y++ L ++GEE + K ++GK +L VN A+Y G Q L L E K+ G VLA Sbjct: 140765 SLYDFSVLNVDGEE-VSMKNYSGKVLLIVNTASYCGFTPQLGSLQRLYERFKSRGFEVLA 140941 Query: 99 FPCNQFGKQEPGTNSEILLGLKYVCPGSGFVPSFQLFEKGDVNGEKEQKVFTFLKNSCPP 158 FPCNQFG QEPG E+ + SF +F+K VNG+ +F FLK Sbjct: 140942 FPCNQFGAQEPGNKQEVC-----SFAAEKYNVSFTIFDKVKVNGKDAVPLFKFLK----- 141091 Query: 159 TSDLLGSSSQLFWEPMKVHDIRWNFEKFLVGPDG 192 S S+ F D++WNF KFLV G Sbjct: 141092 ------SQSKGF----LTSDVKWNFTKFLVDRSG 141163 >gb|GG738848.1| Naegleria gruberi genomic scaffold NAEGRscaffold_4, whole genome shotgun sequence Length = 712659 Score = 92.8 bits (229), Expect = 2e-19 Identities = 61/191 (31%), Positives = 91/191 (47%) Frame = -3 Query: 27 NRKVDCNKGVTGTIYEYGALTLNGEEYIQFKQFAGKHVLFVNVAAYUGLAAQYPELNALQ 86 N+ + + T IY + + E + ++ GK +L VNVA+ G QY +L + Sbjct: 531067 NKTI*YKEMTTTDIYSFSVKDADLNE-VSLSEYKGKVLLIVNVASKCGFTKQYDDLQEVY 530891 Query: 87 EELKNFGVIVLAFPCNQFGKQEPGTNSEILLGLKYVCPGSGFVPSFQLFEKGDVNGEKEQ 146 + K G VLAFPCNQFG QEPGTN EI + S F +F++F+K +VNG Sbjct: 530890 NKYKEQGFEVLAFPCNQFGSQEPGTNEEICTFAR-----SKFKTTFKIFDKVEVNGSGTI 530726 Query: 147 KVFTFLKNSCPPTSDLLGSSSQLFWEPMKVHDIRWNFEKFLVGPDGVPVMHWFHQAPVST 206 ++ +LK GS V ++WNF KFLV G + + Sbjct: 530725 PLYAYLKKE--------GSG-------FLVDAVKWNFTKFLVSKSGKVLKRYSPTTNPKD 530591 Query: 207 VKSDILEYLKQ 217 ++ DI + LK+ Sbjct: 530590 LEDDIQKLLKE 530558 >gb|GG738855.1| Naegleria gruberi genomic scaffold NAEGRscaffold_11, whole genome shotgun sequence Length = 613270 Score = 69.3 bits (168), Expect = 3e-12 Identities = 57/210 (27%), Positives = 85/210 (40%), Gaps = 33/210 (15%) Frame = -2 Query: 41 YEYGALTLNGEEYIQFKQFAGKHVLFVNVAAYUGLAAQYPELNALQEELKNFGVIVLAFP 100 Y + G E + + GK V+ VNVA+ GL QY L AL ++ K+ G ++AFP Sbjct: 514602 YSFTVPDAQGNE-VSLSDYKGKVVMVVNVASSCGLTPQYEGLQALYDKYKDQGFEIIAFP 514426 Query: 101 CNQFGKQ---------------------------------EPGTNSEILLGLKYVCPGSG 127 CNQF Q E G+N EI + + Sbjct: 514425 CNQFAFQVSF**NLNFE*VSNNFYYFYSTN*INLLIYSV*ERGSNDEICAFAR-----NK 514261 Query: 128 FVPSFQLFEKGDVNGEKEQKVFTFLKNSCPPTSDLLGSSSQLFWEPMKVHDIRWNFEKFL 187 F SF++F K VNG + ++ +LK +LF I+WNF KFL Sbjct: 514260 FKVSFKIFAKTHVNGSETIPLYKYLKKE---------GEGKLF------KAIKWNFTKFL 514126 Query: 188 VGPDGVPVMHWFHQAPVSTVKSDILEYLKQ 217 V G + + S ++ DI++ L + Sbjct: 514125 VSKTGKVLKRYSPNTEPSEIEQDIVKLLSE 514036 >gb|GG738908.1| Naegleria gruberi genomic scaffold NAEGRscaffold_64, whole genome shotgun sequence Length = 259034 Score = 64.7 bits (156), Expect = 6e-11 Identities = 56/222 (25%), Positives = 87/222 (39%), Gaps = 28/222 (12%) Frame = +2 Query: 24 KPQNRKVDCNKGVTGTIYEYGALTLNGEEYIQFKQFAGKHVLFVNVAAYUGLAAQYPELN 83 KP+N+ + Y + G + ++ + GK V+ VNVA+ G QY L Sbjct: 225308 KPKNQIEKISTMTESEFYSFVVPDAQGND-VKLSDYKGKVVMVVNVASSCGKTPQYAGLQ 225484 Query: 84 ALQEELKNFGVIVLAFPCNQFGKQ----------------------------EPGTNSEI 115 L E+ K+ G+ +LAFPCNQF Q E G+N EI Sbjct: 225485 KLYEKYKDQGLEILAFPCNQFAFQVSCHPDHQFNYFNDNYYSDQFNIIIN**ERGSNEEI 225664 Query: 116 LLGLKYVCPGSGFVPSFQLFEKGDVNGEKEQKVFTFLKNSCPPTSDLLGSSSQLFWEPMK 175 + + +F++F K VNG ++ +LK LF Sbjct: 225665 CTFTR-----DKYKVTFKMFAKTTVNGGDTIPLYQYLKKE---------GEGSLF----- 225787 Query: 176 VHDIRWNFEKFLVGPDGVPVMHWFHQAPVSTVKSDILEYLKQ 217 + I+WNF KFLV G + + ++ DI + L + Sbjct: 225788 -NAIKWNFTKFLVSKSGKVLQRYSPNTEPEDMEEDIKKLLAE 225910 >gb|GG738853.1| Naegleria gruberi genomic scaffold NAEGRscaffold_9, whole genome shotgun sequence Length = 695587 Score = 45.4 bits (106), Expect(2) = 3e-09 Identities = 32/111 (28%), Positives = 51/111 (45%) Frame = +1 Query: 107 QEPGTNSEILLGLKYVCPGSGFVPSFQLFEKGDVNGEKEQKVFTFLKNSCPPTSDLLGSS 166 QEPGTN EI + + F +F++F+K +VNG + ++ FLK G+ Sbjct: 556429 QEPGTNEEICTFAR-----TKFKVTFKIFDKINVNGSETIPLYNFLKKE--------GAG 556569 Query: 167 SQLFWEPMKVHDIRWNFEKFLVGPDGVPVMHWFHQAPVSTVKSDILEYLKQ 217 V ++WNF KFLV G + + ++ DI + LK+ Sbjct: 556570 -------FLVDAVKWNFTKFLVSKSGKVLKRYAPNTSPKDMEDDIQKLLKE 556701 Score = 33.1 bits (74), Expect(2) = 3e-09 Identities = 15/33 (45%), Positives = 19/33 (57%) Frame = +2 Query: 75 LAAQYPELNALQEELKNFGVIVLAFPCNQFGKQ 107 L E+ + + K+ G VLAFPCNQFG Q Sbjct: 556247 LTESIDEIQEVYNKYKDQGFEVLAFPCNQFGSQ 556345 >gb|GG738888.1| Naegleria gruberi genomic scaffold NAEGRscaffold_44, whole genome shotgun sequence Length = 351708 Score = 54.7 bits (130), Expect = 6e-08 Identities = 43/139 (30%), Positives = 63/139 (45%), Gaps = 4/139 (2%) Frame = -2 Query: 82 LNALQEELKNFG----VIVLAFPCNQFGKQEPGTNSEILLGLKYVCPGSGFVPSFQLFEK 137 L LQE +G V+AFP N F QE G+ EI K F +F++ EK Sbjct: 156248 LEGLQELYDKYGKDGKFEVIAFPSNSFN-QEKGSTEEICAFTK-----DRFKVTFKIMEK 156087 Query: 138 GDVNGEKEQKVFTFLKNSCPPTSDLLGSSSQLFWEPMKVHDIRWNFEKFLVGPDGVPVMH 197 +VNG+ ++ FLK P LGS+ +I+WNF KFL+ +G + Sbjct: 156086 IEVNGDNAHPIYQFLKQEGP--GGFLGST-----------NIKWNFTKFLINKEGKVIGR 155946 Query: 198 WFHQAPVSTVKSDILEYLK 216 + ++ DI + LK Sbjct: 155945 YAPTTDPLSIAKDIEKALK 155889 Database: N.gruberi/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 40,964,085 Number of sequences in database: 784 Lambda K H 0.322 0.139 0.433 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 10,873,588 Number of Sequences: 784 Number of extensions: 158802 Number of successful extensions: 650 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 35 Number of HSP's successfully gapped in prelim test: 17 Number of HSP's that attempted gapping in prelim test: 550 Number of HSP's gapped (non-prelim): 218 length of query: 221 length of database: 13,654,695 effective HSP length: 98 effective length of query: 123 effective length of database: 13,577,863 effective search space: 1670077149 effective search space used: 1670077149 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 59 (27.3 bits)