TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000009_1.0 # Protein # Glutathione peroxidase 6 (GPx6) # Homo sapiens # Complete (221 letters) Database: H.arabidopsidis/genome.fa 5422 sequences; 67,459,135 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|ABWE01000527.1| Hyaloperonospora parasitica strain Emoy2 v-7.... 100 2e-21 gb|ABWE01000143.1| Hyaloperonospora parasitica strain Emoy2 v-7.... 98 8e-21 gb|ABWE01000133.1| Hyaloperonospora parasitica strain Emoy2 v-7.... 59 5e-09 gb|ABWE01000063.1| Hyaloperonospora parasitica strain Emoy2 v-7.... 29 4.5 >gb|ABWE01000527.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont57.15, whole genome shotgun sequence Length = 37660 Score = 100 bits (249), Expect = 2e-21 Identities = 56/162 (34%), Positives = 83/162 (51%), Gaps = 13/162 (8%) Frame = +3 Query: 39 TIYEYGALTLNGEEYIQFKQFAGKHVLFVNVAAYUG-LAAQYPELNALQEELKNFGVIVL 97 T++ + +L G + ++ ++AGK +L VNVA++ Y +LN L + +++L Sbjct: 33843 TVHSFSFRSLTGSKVLRLSEYAGKPILIVNVASHCNSTTTAYVQLNDLSQRFPE--LVIL 34016 Query: 98 AFPCNQFGKQEPGTNSEILLGLKYVCPGSGFVPSFQLFEKGDVNGEKEQKVFTFLKNSCP 157 PCNQFG QE EI L++V PG GF P+F L EK +VNG VF FL+ + P Sbjct: 34017 GCPCNQFGHQENLNGDEIYQSLRHVRPGKGFEPAFPLTEKVEVNGANAHAVFNFLRMALP 34196 Query: 158 ------------PTSDLLGSSSQLFWEPMKVHDIRWNFEKFL 187 S + +L W P+ D+ WNFEK L Sbjct: 34197 YPCDRTLLDEMTTPSGVFSHPMRLVWMPVTRADVSWNFEKVL 34322 >gb|ABWE01000143.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont89.4, whole genome shotgun sequence Length = 70907 Score = 98.2 bits (243), Expect = 8e-21 Identities = 64/178 (35%), Positives = 92/178 (51%), Gaps = 1/178 (0%) Frame = +1 Query: 39 TIYEYGALTLNGEEYIQFKQFAGKHVLFVNVAAYUGLA-AQYPELNALQEELKNFGVIVL 97 + YE ++ +E + +++ GK +L VNV++ GL YPEL L E+ + G++VL Sbjct: 29233 SFYELRDFDMDKKE-VSMEEYKGKVILVVNVSSKCGLTPTNYPELQQLYEKYQEEGLVVL 29409 Query: 98 AFPCNQFGKQEPGTNSEILLGLKYVCPGSGFVPSFQLFEKGDVNGEKEQKVFTFLKNSCP 157 FPCNQF QEPGT+ EI +K + +F LFEK DVNG + VFT+LK P Sbjct: 29410 GFPCNQFKSQEPGTHEEIKEFVKQ------YKVTFPLFEKHDVNGSNARPVFTYLKAKLP 29571 Query: 158 PTSDLLGSSSQLFWEPMKVHDIRWNFEKFLVGPDGVPVMHWFHQAPVSTVKSDILEYL 215 T + I+WNF KFLV +G P + + ++DI E L Sbjct: 29572 GTFG---------------NYIKWNFTKFLVDRNGQPYKRYAPTDLPLSFENDIKELL 29700 Score = 95.9 bits (237), Expect = 4e-20 Identities = 64/180 (35%), Positives = 93/180 (51%), Gaps = 1/180 (0%) Frame = +2 Query: 39 TIYEYGALTLNGEEYIQFKQFAGKHVLFVNVAAYUGLAAQ-YPELNALQEELKNFGVIVL 97 + YE + ++G E + ++ GK VL VNV++ GL + YPEL L E+ + G+ VL Sbjct: 22496 SFYELKDVDMDGNE-VPMSKYKGKVVLAVNVSSKCGLTPKNYPELQQLYEKYQAEGLEVL 22672 Query: 98 AFPCNQFGKQEPGTNSEILLGLKYVCPGSGFVPSFQLFEKGDVNGEKEQKVFTFLKNSCP 157 AFPCNQF QEPGT+ EI+ +K + +F F+K DVNG + VF++LK P Sbjct: 22673 AFPCNQFAGQEPGTHKEIMDFVKQ------YNVTFPFFKKDDVNGATARPVFSYLKTKLP 22834 Query: 158 PTSDLLGSSSQLFWEPMKVHDIRWNFEKFLVGPDGVPVMHWFHQAPVSTVKSDILEYLKQ 217 T ++WNF KFLV +G P + + T++ DI L Q Sbjct: 22835 GTFG---------------DFVKWNFTKFLVDRNGRPYKRFAPKERPLTMEEDIKTLLAQ 22969 Score = 50.8 bits (120), Expect = 1e-06 Identities = 52/183 (28%), Positives = 75/183 (40%), Gaps = 2/183 (1%) Frame = +2 Query: 37 TGTIYEYGALTLNGEEYIQFKQFAGKHVLFVNV--AAYUGLAAQYPELNALQEELKNFGV 94 + ++Y L G Y G L NV + A Q EL L E ++ G+ Sbjct: 31643 SASLYALRDLDAKGSIY-NLSDLRGHVALLTNVPNGSCSSDAKQLSELVHLSTEYEDAGL 31819 Query: 95 IVLAFPCNQFGKQEPGTNSEILLGLKYVCPGSGFVPSFQLFEKGDVNGEKEQKVFTFLKN 154 V+AFP QFG E T+ E++ + + F F + DVNG + F K Sbjct: 31820 KVVAFPSAQFGDAEFDTDEELVEHFRDL-----FGVEFLVLATRDVNGPNARDAMVFCKT 31984 Query: 155 SCPPTSDLLGSSSQLFWEPMKVHDIRWNFEKFLVGPDGVPVMHWFHQAPVSTVKSDILEY 214 P S S++ F E NF KFLVG DG V + + ++ +DI Sbjct: 31985 RLPGASK---SAANAFLEN--------NFVKFLVGRDGQVVKRYTPRDSPLSMVTDIQTL 32131 Query: 215 LKQ 217 LK+ Sbjct: 32132 LKE 32140 >gb|ABWE01000133.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont13.26, whole genome shotgun sequence Length = 72526 Score = 58.9 bits (141), Expect = 5e-09 Identities = 48/157 (30%), Positives = 68/157 (43%), Gaps = 26/157 (16%) Frame = -1 Query: 85 LQEELKNFGVIVLAFPCNQFGKQEPGTNSEILLGLK-----------YVCPGSGFVPSFQ 133 L E+ + G +VL FPCNQFG QEPGTN +I+ K V G G + ++ Sbjct: 14152 LYEKYHDEGFMVLGFPCNQFGGQEPGTNDDIMKFTKEKYHVTFPLFTKVHQG*GEISKYE 13973 Query: 134 LFEKG---------------DVNGEKEQKVFTFLKNSCPPTSDLLGSSSQLFWEPMKVHD 178 EKG DVNG+K +F FLK + +D Sbjct: 13972 R-EKGGC*CLIIYMLRHV*VDVNGDKAHPLFQFLKKRL---------------DGFVTND 13841 Query: 179 IRWNFEKFLVGPDGVPVMHWFHQAPVSTVKSDILEYL 215 I+WNF KFL+ + PV + ++ DI++ L Sbjct: 13840 IKWNFTKFLI-VNHEPVKRYGTTTSPLEIEKDIMQAL 13733 >gb|ABWE01000063.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont22.3, whole genome shotgun sequence Length = 95778 Score = 29.3 bits (64), Expect = 4.5 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 8/60 (13%) Frame = +1 Query: 147 KVFTFLKNSCPPTSDLLGSSSQLFWE-----PMKVHDI-RWNFEKFLVG--PDGVPVMHW 198 K+ L CPPT ++ + L W P V I RWN K + GVPV +W Sbjct: 90985 KITPTLAEKCPPTVVVINHENDLIWALEYEWPNTVIIICRWNIGKNIAAHCQQGVPVDNW 91164 Database: H.arabidopsidis/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 67,459,135 Number of sequences in database: 5422 Lambda K H 0.322 0.139 0.433 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 16,689,128 Number of Sequences: 5422 Number of extensions: 224183 Number of successful extensions: 750 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 268 Number of HSP's successfully gapped in prelim test: 52 Number of HSP's that attempted gapping in prelim test: 460 Number of HSP's gapped (non-prelim): 370 length of query: 221 length of database: 22,486,378 effective HSP length: 101 effective length of query: 120 effective length of database: 21,938,756 effective search space: 2632650720 effective search space used: 2632650720 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 61 (28.1 bits)