TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000009_1.0 # Protein # Glutathione peroxidase 6 (GPx6) # Homo sapiens # Complete (221 letters) Database: E.siliculosus/genome.fa 35 sequences; 195,934,119 total letters Searching...................................done Score E Sequences producing significant alignments: (bits) Value emb|FN649742.1| Ectocarpus siliculosus strain Ec 32, whole genom... 37 0.047 emb|FN649731.1| Ectocarpus siliculosus strain Ec 32, whole genom... 35 0.18 emb|FN649728.1| Ectocarpus siliculosus strain Ec 32, whole genom... 35 0.30 emb|FN649730.1| Ectocarpus siliculosus strain Ec 32, whole genom... 33 1.2 emb|FN649729.1| Ectocarpus siliculosus strain Ec 32, whole genom... 32 1.5 emb|FN649736.1| Ectocarpus siliculosus strain Ec 32, whole genom... 30 7.5 emb|FN649749.1| Ectocarpus siliculosus strain Ec 32, whole genom... 30 7.5 >emb|FN649742.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence assembly, chromosome LG17 Length = 5807719 Score = 37.4 bits (85), Expect = 0.047 Identities = 15/20 (75%), Positives = 17/20 (85%) Frame = +2 Query: 96 VLAFPCNQFGKQEPGTNSEI 115 ++AFPCNQFG QEPGT EI Sbjct: 2178305 IVAFPCNQFGAQEPGTWEEI 2178364 >emb|FN649731.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence assembly, chromosome LG06 Length = 3939081 Score = 35.4 bits (80), Expect = 0.18 Identities = 14/20 (70%), Positives = 17/20 (85%) Frame = -3 Query: 96 VLAFPCNQFGKQEPGTNSEI 115 ++AFPCNQFG QEPG+ EI Sbjct: 2884216 IVAFPCNQFGGQEPGSWQEI 2884157 >emb|FN649728.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence assembly, chromosome LG03 Length = 7313625 Score = 34.7 bits (78), Expect = 0.30 Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 1/43 (2%) Frame = +1 Query: 66 FVNVAAYUGLAAQ-YPELNALQEELKNFGVIVLAFPCNQFGKQ 107 F +A GL AQ Y EL AL + G+ +L FP NQFG Q Sbjct: 1716556 FATFSAPQGLTAQNYAELAALYGKYAGRGLEILGFPSNQFGSQ 1716684 Score = 32.0 bits (71), Expect = 2.0 Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 4/92 (4%) Frame = -2 Query: 66 FVNVAAYUGLAAQ-YPELNALQEELKNFGVIVLAFPCNQFGKQEPGTNSE---ILLGLKY 121 F +A GL AQ Y EL AL + G+ +L FP N+F E T + +L L Sbjct: 1726685 FATFSAPKGLTAQNYAELAALYGKYAGLGLEILGFPSNEFA-SEVHTRIQRLFVLFVLLV 1726509 Query: 122 VCPGSGFVPSFQLFEKGDVNGEKEQKVFTFLK 153 + V F GD NG +K ++F + Sbjct: 1726508 FLTLTTAVSFFFFCVVGDSNGPSMRKHWSFTR 1726413 >emb|FN649730.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence assembly, chromosome LG05 Length = 2246853 Score = 32.7 bits (73), Expect = 1.2 Identities = 26/89 (29%), Positives = 32/89 (35%), Gaps = 4/89 (4%) Frame = -3 Query: 89 LKNFGVIVLAFPCNQFGKQEPGTNSEILLGLKYVCPGSGFVPSF-QLFEKG---DVNGEK 144 L G ++L PCN FG PG + GL C P F + +G DVN Sbjct: 2238931 LNLLGRVLLLSPCNTFGATNPGQQKQRRRGLVSPCRRISAEPLFLYMGVEGLVRDVNNGP 2238752 Query: 145 EQKVFTFLKNSCPPTSDLLGSSSQLFWEP 173 S PP L+G W P Sbjct: 2238751 RACACWGCSTSWPPNGRLMGWGWPCCWRP 2238665 >emb|FN649729.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence assembly, chromosome LG04 Length = 5529539 Score = 32.3 bits (72), Expect = 1.5 Identities = 26/87 (29%), Positives = 37/87 (42%) Frame = -3 Query: 124 PGSGFVPSFQLFEKGDVNGEKEQKVFTFLKNSCPPTSDLLGSSSQLFWEPMKVHDIRWNF 183 PGSGFVP F + GE + ++N+ +++LL S+ +W P + W Sbjct: 5139468 PGSGFVPLLWQFLNTSLMGENNRTGVALVRNNSRASANLL-SAGTWYWLPF----LGWGG 5139304 Query: 184 EKFLVGPDGVPVMHWFHQAPVSTVKSD 210 KF GV H S VK D Sbjct: 5139303 PKF----RGVVEEHTTKHVFASDVKRD 5139235 >emb|FN649736.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence assembly, chromosome LG11 Length = 5521395 Score = 30.0 bits (66), Expect = 7.5 Identities = 13/38 (34%), Positives = 22/38 (57%) Frame = -1 Query: 171 WEPMKVHDIRWNFEKFLVGPDGVPVMHWFHQAPVSTVK 208 W+ M+VH I WN + + G + WFH +P S+++ Sbjct: 1468869 WKSMEVHRIPWNISRKSMEVHG---LVWFHASPWSSME 1468765 >emb|FN649749.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence assembly, chromosome LG24 Length = 3847105 Score = 30.0 bits (66), Expect = 7.5 Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 3/77 (3%) Frame = -3 Query: 105 GKQEPGTNSEILLGLKYVCPGSGFVPS---FQLFEKGDVNGEKEQKVFTFLKNSCPPTSD 161 G+ E +LL ++ PG+ + S L G +N + + T L SC P Sbjct: 1618571 GRYETSRADTVLLSRPHLIPGTPCIHSNSTANLTRFGSINDSQTSSL*TLLP-SCSPYRS 1618395 Query: 162 LLGSSSQLFWEPMKVHD 178 L + QLF+ P++ D Sbjct: 1618394 LGAPARQLFFNPLESSD 1618344 Database: E.siliculosus/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 195,934,119 Number of sequences in database: 35 Lambda K H 0.322 0.139 0.433 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,700,910 Number of Sequences: 35 Number of extensions: 836353 Number of successful extensions: 3103 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 2987 Number of HSP's gapped (non-prelim): 441 length of query: 221 length of database: 65,311,373 effective HSP length: 108 effective length of query: 113 effective length of database: 65,307,593 effective search space: 7379758009 effective search space used: 7379758009 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 65 (29.6 bits)