TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000009_1.0 # Protein # Glutathione peroxidase 6 (GPx6) #
Homo sapiens # Complete
         (221 letters)

Database: C.parvum/genome.fa 
           8 sequences; 9,102,324 total letters

Searching........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000431.1| Cryptosporidium parvum Iowa II chromosome 3, whol...    40   4e-04
gb|CM000434.1| Cryptosporidium parvum Iowa II chromosome 6, whol...    26   5.9  

>gb|CM000431.1| Cryptosporidium parvum Iowa II chromosome 3, whole genome shotgun
              sequence
          Length = 1099352

 Score = 40.0 bits (92), Expect = 4e-04
 Identities = 38/155 (24%), Positives = 61/155 (39%), Gaps = 1/155 (0%)
 Frame = +1

Query: 39     TIYEYGALTLNGEEYIQFKQFAGKHVLFVNVAAYUGLA-AQYPELNALQEELKNFGVIVL 97
              ++Y Y   TL G  +   +   GK V+  NVA+  G   + Y ++  +       G+ ++
Sbjct: 141781 SVYSYTLTTLEGNPF-PMESLKGKVVMVTNVASKCGYTKSYYKQMVRIYSVFAPLGLEII 141957

Query: 98     AFPCNQFGKQEPGTNSEILLGLKYVCPGSGFVPSFQLFEKGDVNGEKEQKVFTFLKNSCP 157
                P  +F  QE     EI    K+          F L E   VNG    +    LK   P
Sbjct: 141958 GLPSREFMGQEFEDPKEIR---KFA---DSHNVKFPLMEICKVNGPDALEFVQKLKRETP 142119

Query: 158    PTSDLLGSSSQLFWEPMKVHDIRWNFEKFLVGPDG 192
                 D   ++         +  I+WNF +FL+  +G
Sbjct: 142120 ELYDEKSNT---------LSAIKWNFSRFLIDKNG 142197


>gb|CM000434.1| Cryptosporidium parvum Iowa II chromosome 6, whole genome shotgun
              sequence
          Length = 1332857

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = +2

Query: 6      QASCLVLFFLVGFAQQTLKPQNRKVDCNKGVTGTIYEYGALTLNGEEYIQFKQ 58
              + SCL L  L+ F ++TLK ++R+   N+            TL+ EE ++ +Q
Sbjct: 760361 EESCLPLRILIKFERKTLKDKDREKPINE----------TKTLHFEEKLEMRQ 760489


  Database: C.parvum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 9,102,324
  Number of sequences in database:  8
  
Lambda     K      H
   0.322    0.139    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,357,108
Number of Sequences: 8
Number of extensions: 33783
Number of successful extensions: 111
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 102
Number of HSP's gapped (non-prelim): 16
length of query: 221
length of database: 3,034,108
effective HSP length: 88
effective length of query: 133
effective length of database: 3,033,404
effective search space: 403442732
effective search space used: 403442732
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)