TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000009_1.0 # Protein # Glutathione peroxidase 6 (GPx6) #
Homo sapiens # Complete
         (221 letters)

Database: C.owczarzaki/genome.fa 
           89 sequences; 28,043,798 total letters

Searching........................................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

supercontig_1.15 of Capsaspora owczarzaki ATCC 30864                   32   0.24 
supercontig_1.14 of Capsaspora owczarzaki ATCC 30864                   28   4.5  

>supercontig_1.15 of Capsaspora owczarzaki ATCC 30864
          Length = 930169

 Score = 32.3 bits (72), Expect = 0.24
 Identities = 29/104 (27%), Positives = 41/104 (39%), Gaps = 36/104 (34%)
 Frame = -3

Query: 77    AQYPELNALQEELKNFGVIVLAFPCNQF-------------------------------- 104
             + Y EL  +  ELK+ G  ++AFPC QF                                
Sbjct: 29018 SNYTELQQIYSELKDKGFEIIAFPCAQFLNVSVDTARVLHHRPLA*TLILIFTLFFFFFF 28839

Query: 105   ----GKQEPGTNSEILLGLKYVCPGSGFVPSFQLFEKGDVNGEK 144
                  +QEP T ++IL   K     + F  +FQL EK  VNG++
Sbjct: 28838 FFCNQQQEPETGAKILDFGK-----TRFGVTFQLMEKTKVNGQE 28722


>supercontig_1.14 of Capsaspora owczarzaki ATCC 30864
          Length = 919646

 Score = 28.1 bits (61), Expect = 4.5
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +2

Query: 120    KYVCPGSGFVPSFQLFEKGDVNGEKEQKVFTFLKNSCPPTS 160
              KY+ P    V  F    +  +    E+ +F F+KN  PPTS
Sbjct: 745265 KYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVKNVLPPTS 745387


  Database: C.owczarzaki/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 28,043,798
  Number of sequences in database:  89
  
Lambda     K      H
   0.322    0.139    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,382,131
Number of Sequences: 89
Number of extensions: 103935
Number of successful extensions: 381
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 373
Number of HSP's gapped (non-prelim): 24
length of query: 221
length of database: 9,347,932
effective HSP length: 95
effective length of query: 126
effective length of database: 9,339,477
effective search space: 1176774102
effective search space used: 1176774102
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)