TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000009_1.0 # Protein # Glutathione peroxidase 6 (GPx6) #
Homo sapiens # Complete
         (221 letters)

Database: C.merolae/genome.fa 
           20 sequences; 16,546,747 total letters

Searching....................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|AP006492.2| Cyanidioschyzon merolae DNA, chromosome 10, comp...    29   1.2  
dbj|AP006496.2| Cyanidioschyzon merolae DNA, chromosome 14, comp...    27   6.1  
dbj|AP006484.2| Cyanidioschyzon merolae DNA, chromosome 2, compl...    27   8.0  

>dbj|AP006492.2| Cyanidioschyzon merolae DNA, chromosome 10, complete genome, complete
              sequence
          Length = 839707

 Score = 29.3 bits (64), Expect = 1.2
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +1

Query: 32     CNKGVTGTIYEYGALTLNGEEYIQF 56
              CN+G T T   + A TLNG E+I F
Sbjct: 169789 CNRGSTRTAKSFPASTLNGREFI*F 169863


>dbj|AP006496.2| Cyanidioschyzon merolae DNA, chromosome 14, complete genome, complete
              sequence
          Length = 852727

 Score = 26.9 bits (58), Expect = 6.1
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -2

Query: 141    NGEKEQKVFTFLKNSCPPTSDLLGSSSQLFWEPM 174
              +G    +V  FL+ S P T   LGS+  L W PM
Sbjct: 311850 SGSMTPRVTLFLRMSIPRTGCSLGSA*VLRWNPM 311749


>dbj|AP006484.2| Cyanidioschyzon merolae DNA, chromosome 2, complete genome, complete
              sequence
          Length = 457013

 Score = 26.6 bits (57), Expect = 8.0
 Identities = 12/41 (29%), Positives = 16/41 (39%)
 Frame = +2

Query: 171    WEPMKVHDIRWNFEKFLVGPDGVPVMHWFHQAPVSTVKSDI 211
              W P   H   WNF+ F          HW HQ  +  +  D+
Sbjct: 267413 WGPWMGHPNGWNFDDF---------GHWGHQGDLQDLSCDV 267508


  Database: C.merolae/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 16,546,747
  Number of sequences in database:  20
  
Lambda     K      H
   0.322    0.139    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,243,067
Number of Sequences: 20
Number of extensions: 58697
Number of successful extensions: 267
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 257
Number of HSP's gapped (non-prelim): 23
length of query: 221
length of database: 5,515,582
effective HSP length: 92
effective length of query: 129
effective length of database: 5,513,742
effective search space: 711272718
effective search space used: 711272718
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)