TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000007_1.0 # Protein # Glutathione peroxidase 4 (GPx4) # Homo sapiens # Complete (197 letters) Database: T.trahens/genome.fa 131 sequences; 28,680,627 total letters Searching.................................................................done Score E Sequences producing significant alignments: (bits) Value gb|GL349472.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 110 6e-25 gb|GL349489.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 100 8e-22 gb|GL349444.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 91 6e-19 gb|GL349469.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 66 1e-11 gb|GL349473.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 31 0.58 gb|GL349495.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 28 2.9 gb|GL349491.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 28 3.8 gb|GL349463.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 28 3.8 gb|GL349457.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 27 6.5 gb|GL349454.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 27 6.5 gb|GL349502.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 27 8.4 >gb|GL349472.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.40, whole genome shotgun sequence Length = 338342 Score = 110 bits (275), Expect = 6e-25 Identities = 68/156 (43%), Positives = 86/156 (55%), Gaps = 9/156 (5%) Frame = -2 Query: 40 SMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQUGKTEVNYTQLVDLHARYAECGLRILA 99 ++++FS + + RG V IVTNVAS G TE Y LVDLH R+ E GL I+ Sbjct: 84664 TLYDFSMDTLFHEPFDFGALRGKVVIVTNVASF*GLTESRYKGLVDLHNRFHEQGLVIVG 84485 Query: 100 FPCNQFGKQEP----GSNEEI-----KEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQ 150 PCNQFG QEP NE I K++ V F + +K VNG AHPL++W K Q Sbjct: 84484 VPCNQFGNQEPFDAENPNELIAFLDDKDWGVSAAVDFLLMTKYEVNGAGAHPLYRWAKSQ 84305 Query: 151 PKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEP 186 K LG +IKWNFT F+ + G V+RYG P Sbjct: 84304 L--KSTLGTSIKWNFTHFVFNAKGEPVRRYGRRASP 84203 Score = 90.9 bits (224), Expect = 5e-19 Identities = 49/148 (33%), Positives = 74/148 (50%), Gaps = 1/148 (0%) Frame = -3 Query: 40 SMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQUGKTEVNYTQLVDLHARYAECGLRILA 99 S+++F +DG + G V IVTN+ ++ E + QL +H Y+E GL +L Sbjct: 82605 SLYQFEMTTLDGDAYDFSALHGKVVIVTNIGTRSKLAESRFLQLQAIHELYSEQGLIVLG 82426 Query: 100 FPCN-QFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILG 158 P +F EP S EI+ A Y V F + VNG DAHPL+ W+K K ++G Sbjct: 82425 VPSTGEFDAAEPSSAAEIRSIANSYGVTFQLLQAAAVNGSDAHPLFAWIK--DKASSMVG 82252 Query: 159 NAIKWNFTKFLIDKNGCVVKRYGPMEEP 186 A K +T + + G ++KR+ P Sbjct: 82251 KAFKAPWTMIVFSRTGELIKRFSHTRTP 82168 >gb|GL349489.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.57, whole genome shotgun sequence Length = 255174 Score = 100 bits (248), Expect = 8e-22 Identities = 74/193 (38%), Positives = 104/193 (53%), Gaps = 3/193 (1%) Frame = +2 Query: 1 MSLGRLC--RLLKPALLCGALAAPGLAGTMCASRDDWRCARSMHEFSAKDIDGHMVNLDK 58 M+ GR+ R+L + A+ A + T + D+ + F+ ++G V L Sbjct: 241445 MACGRMGTRRVLVTMAMLMAVCATAVTATASSGDDNDGGLFAAGSFA---MNGREVLLSS 241615 Query: 59 YRGFVCIVTNVASQUGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIK- 117 Y G +V NVAS+ G TE YT+LV L AR A LRI+ FP N+FG QEP S+ I+ Sbjct: 241616 YAGSPVLVVNVASECGLTEYMYTRLVRL-ARAAP-QLRIIGFPSNEFGGQEPRSSSAIRA 241789 Query: 118 EFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVV 177 E AA Y V F + KI VNG AHP++KW+ + G+ I WNFT FL++ +G + Sbjct: 241790 EMAAAYRVTFPLADKIEVNGARAHPVFKWLVAESGGED-----IAWNFTVFLVNGDGRLE 241954 Query: 178 KRYGPMEEPLVIE 190 R+ P E IE Sbjct: 241955 GRFEPGEPFEAIE 241993 >gb|GL349444.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.12, whole genome shotgun sequence Length = 562821 Score = 90.5 bits (223), Expect = 6e-19 Identities = 44/90 (48%), Positives = 60/90 (66%) Frame = +1 Query: 104 QFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKW 163 QFG QEPG+NEEI EF A YNV+F +F KI VNG +A PL++++K Q + +KW Sbjct: 515614 QFGGQEPGTNEEILEFVARYNVQFPLFDKIDVNGSNAAPLYRYLKAQ--SSTLFMTRVKW 515787 Query: 164 NFTKFLIDKNGCVVKRYGPMEEPLVIEKDL 193 NF F++D +G VV R+ P PL +E D+ Sbjct: 515788 NFETFVVDADGHVVSRHLPTVSPLSLEDDI 515877 Score = 68.6 bits (166), Expect = 3e-12 Identities = 37/88 (42%), Positives = 50/88 (56%) Frame = +2 Query: 16 CGALAAPGLAGTMCASRDDWRCARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQUGK 75 C L L M SR A S+++F+ KDI G ++L Y+ V ++TNVAS+ G Sbjct: 514865 CCLLTTTSLVTNM-GSRQSVPDAESIYDFTVKDIHGEEISLATYKDTVLLITNVASK*GL 515041 Query: 76 TEVNYTQLVDLHARYAECGLRILAFPCN 103 T+ YTQLV LH + + ILAFPCN Sbjct: 515042 TDARYTQLVTLHEKLRDRNFNILAFPCN 515125 >gb|GL349469.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.37, whole genome shotgun sequence Length = 357088 Score = 66.2 bits (160), Expect = 1e-11 Identities = 50/172 (29%), Positives = 79/172 (45%), Gaps = 22/172 (12%) Frame = +2 Query: 44 FSAKDIDGHMVNLDKYRGFVCIVTNVASQUGKTEVNYTQLVDLHARYAECGLRILAFPCN 103 +S+ DI G+ + + +G V + NVAS G T NY L L +YA G ++ FPC Sbjct: 86444 YSSTDIHGNTYDFSQLKGKVVLAVNVASY*GLTIPNYNALNSLMTKYANRGFTVIGFPCA 86623 Query: 104 QFGKQEPG-SNEEIKEF------AAGYNVKFDMFSKICVNGDDAHPLWKWMK-------- 148 QF Q+P ++++I + G+ F + +K VNG P++ ++ Sbjct: 86624 QFDNQQPEFTSQQILDGLKYVRPGGGFVANFPLMAKSDVNGASRSPVYAYLTGACPQPMP 86803 Query: 149 -IQPKGKGILGNAIK-----WNFTKFLIDKN-GCVVKRYGPMEEPLVIEKDL 193 ++P I I+ WNF K+LI + G V Y P P I D+ Sbjct: 86804 ILEPSTAYISWAPIRPTDITWNFQKYLIHPDTGRPVSVYSPDTLPSDIAADI 86959 >gb|GL349473.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.41, whole genome shotgun sequence Length = 350512 Score = 30.8 bits (68), Expect = 0.58 Identities = 13/35 (37%), Positives = 19/35 (54%) Frame = +2 Query: 152 KGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEP 186 K K + I+WNF L+ +G +KRY P +P Sbjct: 32324 KTKKVSSKTIEWNFGMILVGPDGTPLKRYYPSVKP 32428 >gb|GL349495.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.63, whole genome shotgun sequence Length = 205260 Score = 28.5 bits (62), Expect = 2.9 Identities = 13/41 (31%), Positives = 18/41 (43%) Frame = -1 Query: 11 KPALLCGALAAPGLAGTMCASRDDWRCARSMHEFSAKDIDG 51 +P C A G G C R+D R S++ +D DG Sbjct: 1665 RPGACCRGTGACGWVGRSCRGREDRRDRHSVYVCQQRDADG 1543 >gb|GL349491.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.59, whole genome shotgun sequence Length = 227305 Score = 28.1 bits (61), Expect = 3.8 Identities = 12/29 (41%), Positives = 16/29 (55%) Frame = -2 Query: 17 GALAAPGLAGTMCASRDDWRCARSMHEFS 45 G+LAA G C D WRCA ++ E + Sbjct: 89085 GSLAAGVWHGAACGGNDCWRCAAALLELA 88999 >gb|GL349463.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.31, whole genome shotgun sequence Length = 395032 Score = 28.1 bits (61), Expect = 3.8 Identities = 11/21 (52%), Positives = 15/21 (71%) Frame = +3 Query: 13 ALLCGALAAPGLAGTMCASRD 33 A LCGA++ P AG C+SR+ Sbjct: 212967 ASLCGAMSVPRAAGAACSSRN 213029 >gb|GL349457.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.25, whole genome shotgun sequence Length = 436284 Score = 27.3 bits (59), Expect = 6.5 Identities = 16/38 (42%), Positives = 18/38 (47%) Frame = -2 Query: 5 RLCRLLKPALLCGALAAPGLAGTMCASRDDWRCARSMH 42 RL R L+P CG A G G CA R AR+ H Sbjct: 255542 RLWRTLRPVCACGQGACGGRGGGACA-----RLARAWH 255444 >gb|GL349454.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.22, whole genome shotgun sequence Length = 456871 Score = 27.3 bits (59), Expect = 6.5 Identities = 10/21 (47%), Positives = 14/21 (66%) Frame = -2 Query: 15 LCGALAAPGLAGTMCASRDDW 35 +CGALA GL G + A+ + W Sbjct: 180897 VCGALARAGLTGALAAAAEAW 180835 >gb|GL349502.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.70, whole genome shotgun sequence Length = 114015 Score = 26.9 bits (58), Expect = 8.4 Identities = 9/21 (42%), Positives = 13/21 (61%) Frame = +3 Query: 28 MCASRDDWRCARSMHEFSAKD 48 +CA + WRCA + H A+D Sbjct: 25872 LCALHEHWRCADARHRRQARD 25934 Database: T.trahens/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 28,680,627 Number of sequences in database: 131 Lambda K H 0.324 0.140 0.456 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 9,059,512 Number of Sequences: 131 Number of extensions: 157631 Number of successful extensions: 992 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 10 Number of HSP's that attempted gapping in prelim test: 899 Number of HSP's gapped (non-prelim): 277 length of query: 197 length of database: 9,560,209 effective HSP length: 94 effective length of query: 103 effective length of database: 9,547,895 effective search space: 983433185 effective search space used: 983433185 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 57 (26.6 bits)