TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000007_1.0 # Protein # Glutathione peroxidase 4 (GPx4) # Homo sapiens # Complete (197 letters) Database: P.ultimum/genome.fa 82 sequences; 42,801,618 total letters Searching.................................................................................done Score E Sequences producing significant alignments: (bits) Value gb|GL376564.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 155 3e-38 gb|GL376617.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 86 2e-17 gb|GL376611.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 69 4e-12 gb|GL376629.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 63 2e-10 gb|GL376625.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 28 5.5 gb|GL376637.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 28 7.2 gb|GL376567.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 28 7.2 gb|GL376577.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 27 9.4 >gb|GL376564.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875581313, whole genome shotgun sequence Length = 1115623 Score = 155 bits (391), Expect = 3e-38 Identities = 75/155 (48%), Positives = 99/155 (63%) Frame = -2 Query: 39 RSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQUGKTEVNYTQLVDLHARYAECGLRIL 98 +S++E DI G + DKY+G V +V NV+S G T NY +L L +Y + GL IL Sbjct: 433953 KSIYELKDTDISGTEITFDKYKGKVLLVVNVSSNCGLTPTNYPELTALDEKYRDQGLVIL 433774 Query: 99 AFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILG 158 AFPCNQFG QEPG+NEEI EF YN ++ F K VNG A P++ ++K K G G Sbjct: 433773 AFPCNQFGSQEPGTNEEIVEFVKQYNAQYQFFEKADVNGPHARPVFAYLK--AKLPGTFG 433600 Query: 159 NAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDL 193 N IKWNFTKFL+D+NG KR+ P+E+P E ++ Sbjct: 433599 NYIKWNFTKFLVDRNGVPYKRFAPLEKPFSFEDEI 433495 Score = 155 bits (391), Expect = 3e-38 Identities = 76/155 (49%), Positives = 99/155 (63%) Frame = -1 Query: 39 RSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQUGKTEVNYTQLVDLHARYAECGLRIL 98 +S++E DI G + DKY+G V +V NV+S G T NY +L L +Y + GL IL Sbjct: 420037 KSIYELKDTDISGTEITFDKYKGKVLLVVNVSSNCGLTPTNYPELTALDEKYRDQGLVIL 419858 Query: 99 AFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILG 158 AFPCNQFG QEPG+NEEI EF YN ++ F K VNG A P++ ++K K G G Sbjct: 419857 AFPCNQFGSQEPGTNEEIVEFVKQYNAQYQFFEKADVNGPHARPVFAYLK--AKLPGTFG 419684 Query: 159 NAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDL 193 N IKWNFTKFL+D+NG KR+ P ++PL E D+ Sbjct: 419683 NYIKWNFTKFLVDRNGQPFKRFAPTDKPLSFEHDI 419579 Score = 150 bits (378), Expect = 1e-36 Identities = 73/160 (45%), Positives = 101/160 (63%) Frame = +3 Query: 34 DWRCARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQUGKTEVNYTQLVDLHARYAEC 93 D +S++E D+ G+ V+++KY+G V +V NV+S G T NY +L +L +Y + Sbjct: 442542 DTEAVKSIYELKDYDMQGNEVSMEKYKGKVLLVVNVSSLCGLTPTNYPELAELDKKYRDQ 442721 Query: 94 GLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKG 153 GL ILAFPCNQF QEPG++EEI EF YN +F F K VNG A P++ ++K K Sbjct: 442722 GLEILAFPCNQFSNQEPGTHEEIMEFVKKYNCEFPFFEKHDVNGASARPVFTYLK--AKL 442895 Query: 154 KGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDL 193 G GN +KWNFTKFL+D+NG KR+ P + P E D+ Sbjct: 442896 PGSFGNFVKWNFTKFLVDRNGQPYKRFAPKDLPFSFEDDI 443015 Score = 150 bits (378), Expect = 1e-36 Identities = 73/160 (45%), Positives = 101/160 (63%) Frame = -3 Query: 34 DWRCARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQUGKTEVNYTQLVDLHARYAEC 93 D +S++E D+ G+ V+++KY+G V +V NV+S G T NY +L +L +Y + Sbjct: 435920 DTEAVKSIYELKDYDMQGNEVSMEKYKGKVLLVVNVSSLCGLTPTNYPELAELDKKYRDQ 435741 Query: 94 GLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKG 153 GL ILAFPCNQF QEPG++EEI EF YN +F F K VNG A P++ ++K K Sbjct: 435740 GLEILAFPCNQFASQEPGTHEEIMEFVKKYNCEFPFFEKHDVNGASARPVFTYLK--AKL 435567 Query: 154 KGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDL 193 G GN +KWNFTKFL+D+NG KR+ P + P E D+ Sbjct: 435566 PGSFGNFVKWNFTKFLVDRNGQPYKRFAPKDLPFSFEDDI 435447 Score = 147 bits (371), Expect = 6e-36 Identities = 69/156 (44%), Positives = 99/156 (63%) Frame = -1 Query: 38 ARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQUGKTEVNYTQLVDLHARYAECGLRI 97 A S+++F DI G+ V+ DKYRG V ++ NVAS NY QL LH +Y G + Sbjct: 429982 AHSIYQFMDLDIHGNPVSFDKYRGKVLLIVNVASGCKLASHNYPQLTHLHEKYRNQGFEV 429803 Query: 98 LAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGIL 157 LAFPCNQFG +EP +NEEI ++ + +N +++F K VNG A P++ ++K K G Sbjct: 429802 LAFPCNQFGSEEPRNNEEIVQYVSQFNANYELFEKADVNGSHARPVFTFLK--AKLPGTF 429629 Query: 158 GNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDL 193 G+ +KWNFTKFL+D+NG KR+ P + P +E D+ Sbjct: 429628 GSFVKWNFTKFLVDRNGVPYKRFSPKDSPFDLEDDI 429521 Score = 146 bits (368), Expect = 1e-35 Identities = 70/156 (44%), Positives = 99/156 (63%) Frame = -2 Query: 38 ARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQUGKTEVNYTQLVDLHARYAECGLRI 97 ARS+++F +I G+ V+ DKYRG V + NVAS NY +L L+ RY + G + Sbjct: 423720 ARSIYQFMDVNIYGNPVSFDKYRGKVLLFVNVASNSKLAPQNYPELSMLYQRYCDQGFEV 423541 Query: 98 LAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGIL 157 LAFPCNQF +EPG+ E+I E+ +N + F K VNG A P++ ++K + GK Sbjct: 423540 LAFPCNQFRSEEPGTTEQILEYVKQFNANYQFFEKADVNGAHARPVFTYLKAKLPGK--F 423367 Query: 158 GNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDL 193 GN +KWNFTKFL+D+NG KRY P + PL +E+D+ Sbjct: 423366 GNYVKWNFTKFLVDRNGMPYKRYAPTDSPLALEQDI 423259 Score = 142 bits (359), Expect = 2e-34 Identities = 69/160 (43%), Positives = 103/160 (64%) Frame = -1 Query: 34 DWRCARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQUGKTEVNYTQLVDLHARYAEC 93 D + A+S+++F +DI G+ V+ DKYRG V +V NVAS N+ L LH +Y Sbjct: 427240 DIQRAQSIYQFMDRDIHGNPVSFDKYRGKVLLVVNVASGCKMAYHNFPALTVLHEKYRNQ 427061 Query: 94 GLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKG 153 G ILAFPCNQFG +EP ++EEI ++ + +N +++F K VNG A P++ ++K K Sbjct: 427060 GFEILAFPCNQFGGEEPRNHEEILQYLSQFNANYELFEKADVNGSHARPVFMFLK--AKL 426887 Query: 154 KGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDL 193 G G+ +KWNFTKFL+D+NG KR+ P + P +E+D+ Sbjct: 426886 PGTFGSFVKWNFTKFLVDRNGKPFKRFSPTDSPFELEQDI 426767 Score = 140 bits (353), Expect = 8e-34 Identities = 72/160 (45%), Positives = 97/160 (60%) Frame = -3 Query: 34 DWRCARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQUGKTEVNYTQLVDLHARYAEC 93 D S+++ D+ G V +DKY+G V +V NV+S G T NY LV+L +Y + Sbjct: 437753 DAEAVTSIYDLKDYDMSGQEVPIDKYKGKVLLVVNVSSNCGLTPSNYPALVELDNKYRDQ 437574 Query: 94 GLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKG 153 GL +LAFPCNQF QEPG++EEI EF YN KF F K VNG A P++ ++K + Sbjct: 437573 GLVVLAFPCNQFALQEPGTHEEIMEFVKKYNCKFPFFEKNDVNGAKARPVFTYLKAKLPT 437394 Query: 154 KGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDL 193 K G+ +KWNFTKFLID+ G KR+ P + P E D+ Sbjct: 437393 K--FGSFVKWNFTKFLIDRKGQPYKRFSPYDLPTSFEDDI 437280 Score = 82.0 bits (201), Expect = 3e-16 Identities = 53/157 (33%), Positives = 80/157 (50%), Gaps = 3/157 (1%) Frame = -1 Query: 40 SMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQUGKTEVNYTQLVDLHARYAECGLRILA 99 S + + D G ++ G V +V NVAS+ + + Y +LV + +Y + G +LA Sbjct: 402322 SFYSLTDADASGKRFLMEDLVGSVVLVVNVASKDPQAPLQYPELVTIADKYHDDGFTVLA 402143 Query: 100 FPCNQFG--KQEPGSNEEIKEF-AAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGI 156 FP +QFG QE ++ EI + Y V F + +K VNG DA + ++ G Sbjct: 402142 FPSDQFGGDGQEFDTDGEILSYLVQAYKVNFPIMTKRDVNGLDARDAFLYLNAHLPGS-- 401969 Query: 157 LGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDL 193 G +WNFTKFLID++G KRY P +E D+ Sbjct: 401968 FGPFTEWNFTKFLIDRHGKPFKRYETSVLPQSLEADI 401858 >gb|GL376617.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582020, whole genome shotgun sequence Length = 790859 Score = 85.9 bits (211), Expect = 2e-17 Identities = 52/131 (39%), Positives = 72/131 (54%), Gaps = 23/131 (17%) Frame = +1 Query: 86 LHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFA-AGYNVKFDMFSKIC---------- 134 L+ +Y E GL ILAFPCNQFG QE G+ +I +F Y+V F +F+K+ Sbjct: 515056 LYEKYHEQGLEILAFPCNQFGSQESGTQAQIMQFVEEHYHVTFPVFAKVIPPRCAQYAGE 515235 Query: 135 ------------VNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGP 182 VNG +AHPL+ ++K K G + + IKWNF+KFLI +G KRY Sbjct: 515236 LNLLTEVSP*VDVNGANAHPLFTFLK--SKLSGFITSNIKWNFSKFLI-VDGVPFKRYAT 515406 Query: 183 MEEPLVIEKDL 193 PL +E+D+ Sbjct: 515407 TTSPLAMEQDI 515439 >gb|GL376611.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582014, whole genome shotgun sequence Length = 494327 Score = 68.6 bits (166), Expect = 4e-12 Identities = 41/118 (34%), Positives = 65/118 (55%), Gaps = 7/118 (5%) Frame = +2 Query: 39 RSMHEFSAKDIDG-HMVNLDKYRGFVCIVTNVASQUGKTEVNYTQLVDLHARYAECGLRI 97 +++H+FS + + G + L Y G V ++ NVAS T YTQ+ +L +Y + L I Sbjct: 346697 KTVHQFSFRSLTGGEYIRLADYAGKVILLVNVASHCNSTTKAYTQMNELAEKYPD--LVI 346870 Query: 98 LAFPCNQFGKQEPGSNEEIKEF------AAGYNVKFDMFSKICVNGDDAHPLWKWMKI 149 + PCNQFG QE + EEI G+ KF + K+ VNG +AH ++ ++K+ Sbjct: 346871 IGCPCNQFGHQENLNGEEIYTSLKHIRPGKGFEPKFKLTEKMEVNGANAHAVFNFLKL 347044 >gb|GL376629.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582032, whole genome shotgun sequence Length = 863081 Score = 62.8 bits (151), Expect = 2e-10 Identities = 45/149 (30%), Positives = 68/149 (45%), Gaps = 25/149 (16%) Frame = -3 Query: 65 IVTNVASQUGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAG-- 122 +V N AS+ G T QL +LH R+ GL +LA P N F QE G+++EI + Sbjct: 591669 LVVNTASKCGYTP-QLKQLQELHERFEAKGLVVLAVPSNDFSNQETGTDDEIVQTYTSKE 591493 Query: 123 YNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKG-----------------------ILGN 159 +NV F + K+ V GD+AH ++ + ++ ++ Sbjct: 591492 FNVSFPIAKKVHVTGDNAHAFFERIVVEYSRSVAPTYVSWQFCRWICF*SFSQLL*MVCG 591313 Query: 160 AIKWNFTKFLIDKNGCVVKRYGPMEEPLV 188 +WNF KFLID G + + EPLV Sbjct: 591312 FFRWNFDKFLIDHRGDLRAVFPHDTEPLV 591226 >gb|GL376625.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582028, whole genome shotgun sequence Length = 960197 Score = 28.1 bits (61), Expect = 5.5 Identities = 12/30 (40%), Positives = 16/30 (53%) Frame = +3 Query: 7 CRLLKPALLCGALAAPGLAGTMCASRDDWR 36 CR +PA C A PG+A + A+ WR Sbjct: 590835 CRTARPAQHCSRSARPGIAQSRVAASCPWR 590924 >gb|GL376637.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582040, whole genome shotgun sequence Length = 493084 Score = 27.7 bits (60), Expect = 7.2 Identities = 15/28 (53%), Positives = 16/28 (57%), Gaps = 3/28 (10%) Frame = -2 Query: 16 CGALAA---PGLAGTMCASRDDWRCARS 40 C A AA PG AGT A WRC+RS Sbjct: 347403 CRARAAATPPGRAGTRRALSSGWRCSRS 347320 >gb|GL376567.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875581354, whole genome shotgun sequence Length = 1199448 Score = 27.7 bits (60), Expect = 7.2 Identities = 13/33 (39%), Positives = 18/33 (54%) Frame = -1 Query: 39 RSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVAS 71 R+ HEFS D GH + + G + +VT V S Sbjct: 884916 RNAHEFSYSDESGHRIGRMRALGTMLMVTGVCS 884818 >gb|GL376577.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875581463, whole genome shotgun sequence Length = 305633 Score = 27.3 bits (59), Expect = 9.4 Identities = 15/35 (42%), Positives = 17/35 (48%) Frame = -3 Query: 8 RLLKPALLCGALAAPGLAGTMCASRDDWRCARSMH 42 RLL+P G AAP G C + D R AR H Sbjct: 219306 RLLRPQARRGLRAAPEAPGEPCDADDQGRRARRAH 219202 Database: P.ultimum/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 42,801,618 Number of sequences in database: 82 Lambda K H 0.324 0.140 0.456 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 12,805,957 Number of Sequences: 82 Number of extensions: 213428 Number of successful extensions: 1143 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 11 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 1077 Number of HSP's gapped (non-prelim): 119 length of query: 197 length of database: 14,267,206 effective HSP length: 97 effective length of query: 100 effective length of database: 14,259,252 effective search space: 1425925200 effective search space used: 1425925200 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 59 (27.3 bits)