TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000007_1.0 # Protein # Glutathione peroxidase 4 (GPx4) # Homo sapiens # Complete (197 letters) Database: P.tricornutum/genome.fa 31 sequences; 23,733,684 total letters Searching...............................done Score E Sequences producing significant alignments: (bits) Value gb|CM000613.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 115 2e-26 gb|CM000620.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 100 4e-22 gb|CM000632.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 51 3e-07 gb|CM000618.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 29 1.9 gb|CM000617.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 27 7.0 gb|CM000621.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 27 9.2 gb|CM000612.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ... 27 9.2 >gb|CM000613.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 10, whole genome shotgun sequence Length = 976485 Score = 115 bits (288), Expect = 2e-26 Identities = 65/155 (41%), Positives = 95/155 (61%), Gaps = 3/155 (1%) Frame = +2 Query: 40 SMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQUGKTEVNYTQLVDLHARYAECGLRILA 99 S + SAKDIDG+ + + +RG V ++TNVAS G TE +Y LV+L + ++ + ILA Sbjct: 34937 SFFDLSAKDIDGNAIAFESFRGKVTVLTNVASYCGYTESHYRGLVELWSVMSDKAVEILA 35116 Query: 100 FPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGN 159 FPCNQFG QEP ++IK+FA+ V+F + KI VNG +AH ++K++K Q Sbjct: 35117 FPCNQFGAQEPEEADKIKDFASSKGVRFRIMEKINVNGPNAHQVYKYLKAQAGPP----- 35281 Query: 160 AIKWNF-TKFLIDKNGCVVKR--YGPMEEPLVIEK 191 I WNF T F++ +G V GPME V+++ Sbjct: 35282 TINWNFGTYFVVGPDGVVESHSGVGPMELRDVVDE 35386 >gb|CM000620.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 18, whole genome shotgun sequence Length = 702471 Score = 100 bits (250), Expect = 4e-22 Identities = 59/133 (44%), Positives = 76/133 (57%), Gaps = 5/133 (3%) Frame = +2 Query: 40 SMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQUGKTEVNYTQLVDLHARYAECGLRILA 99 S + + K +DG V + + G VC+V NVAS+ G T++NYTQL L Y GL+ILA Sbjct: 446483 SFYSCADKSMDGEAVPMSSFEGNVCLVVNVASK*GLTKMNYTQLPQLVDEYGSRGLKILA 446662 Query: 100 FPCNQFGKQEPGSNEEIKEFAAGYN----VKFDMFSKICVNGDDAHPLWKWM-KIQPKGK 154 FPCNQFG QEPGS EEI F A Y+ K F K VNG + ++ ++ K P Sbjct: 446663 FPCNQFGGQEPGSPEEILAFVAKYDKEMAKKLVFFEKADVNGANTREVYSYLKKTCPNED 446842 Query: 155 GILGNAIKWNFTK 167 G I+WNF K Sbjct: 446843 GT--TDIRWNFGK 446875 >gb|CM000632.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 30, whole genome shotgun sequence Length = 317207 Score = 51.2 bits (121), Expect = 3e-07 Identities = 38/139 (27%), Positives = 65/139 (46%), Gaps = 10/139 (7%) Frame = +1 Query: 65 IVTNVASQUGKTEVNYTQLVDLHARYA----ECGLRILAFPCNQFGKQEPGSNEEIK--- 117 +V N+ +L+ L +Y+ + I+ P +Q G EP ++ ++ Sbjct: 164494 VVVNIKQDDPVARKTIPELISLATKYSGRDGTGAVAIVCCPTDQ-GYYEPDTSALLRLKL 164670 Query: 118 --EFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLID-KNG 174 E+ G N + K+ + G AHP W+W++ + LG I+ NF KFLID + G Sbjct: 164671 GAEYGYGINPATIVTDKVNLLGTGAHPFWRWLQSTSRTPAGLGR-IEGNFEKFLIDGRTG 164847 Query: 175 CVVKRYGPMEEPLVIEKDL 193 V+RY PL ++ D+ Sbjct: 164848 LPVRRYPRKYAPLNLQDDV 164904 >gb|CM000618.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 16, whole genome shotgun sequence Length = 764225 Score = 28.9 bits (63), Expect = 1.9 Identities = 16/52 (30%), Positives = 25/52 (48%) Frame = -3 Query: 40 SMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQUGKTEVNYTQLVDLHARYA 91 SM F +GH+ L + G+V + N A + E NY++L D +A Sbjct: 559434 SMSRFRVASREGHLDRLKRMYGYVKKMKNGAIRVRTDEPNYSELPDKRHNWA 559279 Score = 26.6 bits (57), Expect = 9.2 Identities = 15/52 (28%), Positives = 25/52 (48%) Frame = -1 Query: 40 SMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQUGKTEVNYTQLVDLHARYA 91 SM F +GH+ L + G+V + N A + E +Y++L D +A Sbjct: 169298 SMSRFRVAPREGHLDRLKRMYGYVKKMKNGAIRVRTDEPDYSELPDKRHNWA 169143 >gb|CM000617.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 15, whole genome shotgun sequence Length = 814910 Score = 26.9 bits (58), Expect = 7.0 Identities = 14/24 (58%), Positives = 14/24 (58%) Frame = +2 Query: 4 GRLCRLLKPALLCGALAAPGLAGT 27 G LCRLL P L G A P AGT Sbjct: 610022 GSLCRLLHPYSLSGNTALPHGAGT 610093 >gb|CM000621.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 19, whole genome shotgun sequence Length = 690427 Score = 26.6 bits (57), Expect = 9.2 Identities = 15/52 (28%), Positives = 25/52 (48%) Frame = -2 Query: 40 SMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQUGKTEVNYTQLVDLHARYA 91 SM F +GH+ L + G+V + N A + E +Y++L D +A Sbjct: 678228 SMSRFRVAPREGHLDRLKRMYGYVKKMKNGAIRVRTDEPDYSELPDKRHNWA 678073 >gb|CM000612.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 9, whole genome shotgun sequence Length = 1002813 Score = 26.6 bits (57), Expect = 9.2 Identities = 10/25 (40%), Positives = 14/25 (56%) Frame = +1 Query: 84 VDLHARYAECGLRILAFPCNQFGKQ 108 +DLH + ECG+ +A P G Q Sbjct: 543811 IDLHDEWGECGMVPVALPSRHVGHQ 543885 Database: P.tricornutum/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 23,733,684 Number of sequences in database: 31 Lambda K H 0.324 0.140 0.456 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 6,769,303 Number of Sequences: 31 Number of extensions: 107084 Number of successful extensions: 462 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 442 Number of HSP's gapped (non-prelim): 55 length of query: 197 length of database: 7,911,228 effective HSP length: 93 effective length of query: 104 effective length of database: 7,908,345 effective search space: 822467880 effective search space used: 822467880 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 57 (26.6 bits)