TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000007_1.0 # Protein # Glutathione peroxidase 4 (GPx4) # Homo sapiens # Complete (197 letters) Database: H.arabidopsidis/genome.fa 5422 sequences; 67,459,135 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|ABWE01000143.1| Hyaloperonospora parasitica strain Emoy2 v-7.... 149 2e-36 gb|ABWE01000133.1| Hyaloperonospora parasitica strain Emoy2 v-7.... 108 4e-24 gb|ABWE01000527.1| Hyaloperonospora parasitica strain Emoy2 v-7.... 70 2e-12 gb|ABWE01000581.1| Hyaloperonospora parasitica strain Emoy2 v-7.... 29 3.7 gb|ABWE01001333.1| Hyaloperonospora parasitica strain Emoy2 v-7.... 29 4.8 gb|ABWE01000100.1| Hyaloperonospora parasitica strain Emoy2 v-7.... 29 4.8 gb|ABWE01000035.1| Hyaloperonospora parasitica strain Emoy2 v-7.... 28 6.3 >gb|ABWE01000143.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont89.4, whole genome shotgun sequence Length = 70907 Score = 149 bits (377), Expect = 2e-36 Identities = 73/163 (44%), Positives = 104/163 (63%) Frame = +2 Query: 31 SRDDWRCARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQUGKTEVNYTQLVDLHARY 90 +R+D +S +E D+DG+ V + KY+G V + NV+S+ G T NY +L L+ +Y Sbjct: 22469 NREDTAKIKSFYELKDVDMDGNEVPMSKYKGKVVLAVNVSSKCGLTPKNYPELQQLYEKY 22648 Query: 91 AECGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQ 150 GL +LAFPCNQF QEPG+++EI +F YNV F F K VNG A P++ ++K Sbjct: 22649 QAEGLEVLAFPCNQFAGQEPGTHKEIMDFVKQYNVTFPFFKKDDVNGATARPVFSYLK-- 22822 Query: 151 PKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDL 193 K G G+ +KWNFTKFL+D+NG KR+ P E PL +E+D+ Sbjct: 22823 TKLPGTFGDFVKWNFTKFLVDRNGRPYKRFAPKERPLTMEEDI 22951 Score = 149 bits (377), Expect = 2e-36 Identities = 75/156 (48%), Positives = 101/156 (64%) Frame = +1 Query: 38 ARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQUGKTEVNYTQLVDLHARYAECGLRI 97 A S +E D+D V++++Y+G V +V NV+S+ G T NY +L L+ +Y E GL + Sbjct: 29227 ATSFYELRDFDMDKKEVSMEEYKGKVILVVNVSSKCGLTPTNYPELQQLYEKYQEEGLVV 29406 Query: 98 LAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGIL 157 L FPCNQF QEPG++EEIKEF Y V F +F K VNG +A P++ ++K K G Sbjct: 29407 LGFPCNQFKSQEPGTHEEIKEFVKQYKVTFPLFEKHDVNGSNARPVFTYLK--AKLPGTF 29580 Query: 158 GNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDL 193 GN IKWNFTKFL+D+NG KRY P + PL E D+ Sbjct: 29581 GNYIKWNFTKFLVDRNGQPYKRYAPTDLPLSFENDI 29688 Score = 81.6 bits (200), Expect = 6e-16 Identities = 54/162 (33%), Positives = 88/162 (54%), Gaps = 6/162 (3%) Frame = +2 Query: 38 ARSMHEFSAKDID--GHMVNLDKYRGFVCIVTNVASQUGKTEVNY-TQLVDLHARYAECG 94 A S ++ +D+D G + NL RG V ++TNV + ++ ++LV L Y + G Sbjct: 31637 ASSASLYALRDLDAKGSIYNLSDLRGHVALLTNVPNGSCSSDAKQLSELVHLSTEYEDAG 31816 Query: 95 LRILAFPCNQFGKQEPGSNEEIKE-FAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKG 153 L+++AFP QFG E ++EE+ E F + V+F + + VNG +A + K + G Sbjct: 31817 LKVVAFPSAQFGDAEFDTDEELVEHFRDLFGVEFLVLATRDVNGPNARDAMVFCKTRLPG 31996 Query: 154 --KGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDL 193 K ++ NF KFL+ ++G VVKRY P + PL + D+ Sbjct: 31997 ASKSAANAFLENNFVKFLVGRDGQVVKRYTPRDSPLSMVTDI 32122 >gb|ABWE01000133.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont13.26, whole genome shotgun sequence Length = 72526 Score = 108 bits (271), Expect = 4e-24 Identities = 83/252 (32%), Positives = 120/252 (47%), Gaps = 63/252 (25%) Frame = -1 Query: 5 RLCRLLKPALLCGALAAPGLAGTMCASRDDWRCARSMHEFSAKDIDGHMVNLDKYRGF-V 63 ++ ++L L+ ALA+ L C + D +S +FS D+ H V++ + F V Sbjct: 14485 KMAQMLLRVLIVVALASRLLVD--CCAADANGDKQSFLDFSVTDLRDHEVSMRTFSAFPV 14312 Query: 64 CIVTNVASQUGKTEVNYTQLV-------------------------------DLHARYAE 92 +V NVAS+ G T+ NY +L +L+ +Y + Sbjct: 14311 ILVVNVASECGYTDKNYRELQVRSFTY*QYTSTS**FIELVSNACFLARKM*ELYEKYHD 14132 Query: 93 CGLRILAFPCNQFGKQEPGSNEEIKEFAAG-YNVKFDMFSKI------------------ 133 G +L FPCNQFG QEPG+N++I +F Y+V F +F+K+ Sbjct: 14131 EGFMVLGFPCNQFGGQEPGTNDDIMKFTKEKYHVTFPLFTKVHQG*GEISKYEREKGGC* 13952 Query: 134 C------------VNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYG 181 C VNGD AHPL++++K + G + N IKWNFTKFLI N VKRYG Sbjct: 13951 CLIIYMLRHV*VDVNGDKAHPLFQFLK--KRLDGFVTNDIKWNFTKFLI-VNHEPVKRYG 13781 Query: 182 PMEEPLVIEKDL 193 PL IEKD+ Sbjct: 13780 TTTSPLEIEKDI 13745 >gb|ABWE01000527.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont57.15, whole genome shotgun sequence Length = 37660 Score = 70.1 bits (170), Expect = 2e-12 Identities = 48/141 (34%), Positives = 73/141 (51%), Gaps = 9/141 (6%) Frame = +3 Query: 18 ALAAPGLAGTMCASRDDWRCAR--SMHEFSAKDIDGHMV-NLDKYRGFVCIVTNVASQUG 74 A+A P + ++RD AR ++H FS + + G V L +Y G ++ NVAS Sbjct: 33771 AVAVPMTSHFSSSTRDCVSTARRKTVHSFSFRSLTGSKVLRLSEYAGKPILIVNVASHCN 33950 Query: 75 KTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEF------AAGYNVKFD 128 T Y QL DL R+ E L IL PCNQFG QE + +EI + G+ F Sbjct: 33951 STTTAYVQLNDLSQRFPE--LVILGCPCNQFGHQENLNGDEIYQSLRHVRPGKGFEPAFP 34124 Query: 129 MFSKICVNGDDAHPLWKWMKI 149 + K+ VNG +AH ++ ++++ Sbjct: 34125 LTEKVEVNGANAHAVFNFLRM 34187 >gb|ABWE01000581.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont243.2, whole genome shotgun sequence Length = 35324 Score = 29.3 bits (64), Expect = 3.7 Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 12/68 (17%) Frame = -1 Query: 17 GALAAPGLAGTMCASRDDWR--CARSMHEFSAKDIDGHM-VNLDKYR---------GFVC 64 GA+AA LAG +C SR W+ R MHE + K++ + +++++ R F C Sbjct: 12563 GAVAAGALAGELCGSR-HWQNPQLRLMHETTVKELSHRLALSIEQTRVLSTDTSDTSFSC 12387 Query: 65 IVTNVASQ 72 I ++A Q Sbjct: 12386 IGASIAVQ 12363 >gb|ABWE01001333.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont0.31, whole genome shotgun sequence Length = 15564 Score = 28.9 bits (63), Expect = 4.8 Identities = 12/39 (30%), Positives = 22/39 (56%) Frame = -3 Query: 115 EIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKG 153 E + A GY+ ++ S C+N + P+WK + +Q +G Sbjct: 7699 EYSKMARGYSPDWEPLSFSCLNLANVTPVWKSVNVQLRG 7583 >gb|ABWE01000100.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont63.14, whole genome shotgun sequence Length = 82817 Score = 28.9 bits (63), Expect = 4.8 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = +3 Query: 16 CGALAAPGLAGTMCASRDDWRCARSMHEF 44 CGALA PG+ G + A + W+C S+ F Sbjct: 15471 CGALAVPGVFGAIHA--EHWQCLESLFFF 15551 >gb|ABWE01000035.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont3.9, whole genome shotgun sequence Length = 114233 Score = 28.5 bits (62), Expect = 6.3 Identities = 9/13 (69%), Positives = 10/13 (76%) Frame = +2 Query: 27 TMCASRDDWRCAR 39 T C RDDWRC+R Sbjct: 25892 TFCCDRDDWRCSR 25930 Database: H.arabidopsidis/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 67,459,135 Number of sequences in database: 5422 Lambda K H 0.324 0.140 0.456 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 18,783,218 Number of Sequences: 5422 Number of extensions: 293154 Number of successful extensions: 1057 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 420 Number of HSP's successfully gapped in prelim test: 38 Number of HSP's that attempted gapping in prelim test: 582 Number of HSP's gapped (non-prelim): 558 length of query: 197 length of database: 22,486,378 effective HSP length: 100 effective length of query: 97 effective length of database: 21,944,178 effective search space: 2128585266 effective search space used: 2128585266 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 60 (27.7 bits)