TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000007_1.0 # Protein # Glutathione peroxidase 4 (GPx4) # Homo sapiens # Complete (197 letters) Database: E.siliculosus/genome.fa 35 sequences; 195,934,119 total letters Searching...................................done Score E Sequences producing significant alignments: (bits) Value emb|FN649742.1| Ectocarpus siliculosus strain Ec 32, whole genom... 44 4e-04 emb|FN649728.1| Ectocarpus siliculosus strain Ec 32, whole genom... 43 7e-04 emb|FN649731.1| Ectocarpus siliculosus strain Ec 32, whole genom... 40 0.004 emb|FN649726.1| Ectocarpus siliculosus strain Ec 32, whole genom... 31 2.7 emb|FN649727.1| Ectocarpus siliculosus strain Ec 32, whole genom... 30 6.0 emb|FN649751.1| Ectocarpus siliculosus strain Ec 32, whole genom... 30 6.0 emb|FN649760.1| Ectocarpus siliculosus strain Ec 32, whole genom... 30 6.0 >emb|FN649742.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence assembly, chromosome LG17 Length = 5807719 Score = 43.9 bits (102), Expect = 4e-04 Identities = 22/40 (55%), Positives = 27/40 (67%), Gaps = 1/40 (2%) Frame = +2 Query: 95 LRILAFPCNQFGKQEPGSNEEIKEFA-AGYNVKFDMFSKI 133 L I+AFPCNQFG QEPG+ EEI A + V F + SK+ Sbjct: 2178299 LAIVAFPCNQFGAQEPGTWEEIASLADRKFGVTFPIMSKV 2178418 Score = 30.0 bits (66), Expect = 6.0 Identities = 15/38 (39%), Positives = 21/38 (55%) Frame = +3 Query: 133 ICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLI 170 I VNG + P++ W+K + I WNFTKFL+ Sbjct: 2179443 IDVNGLHSSPMFAWLKAASGNP----HDIPWNFTKFLV 2179544 >emb|FN649728.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence assembly, chromosome LG03 Length = 7313625 Score = 43.1 bits (100), Expect = 7e-04 Identities = 22/51 (43%), Positives = 34/51 (66%) Frame = +1 Query: 117 KEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTK 167 ++FA + +F+K+ VNG A PL+K++K +G G+ +AIKWNFTK Sbjct: 1717768 QDFAKARGATYPVFAKVEVNGFGAIPLYKFLK-DRQGGGLGISAIKWNFTK 1717917 Score = 41.2 bits (95), Expect = 0.003 Identities = 19/35 (54%), Positives = 22/35 (62%) Frame = +1 Query: 74 GKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQ 108 G T NY +L L+ +YA GL IL FP NQFG Q Sbjct: 1716580 GLTAQNYAELAALYGKYAGRGLEILGFPSNQFGSQ 1716684 Score = 41.2 bits (95), Expect = 0.003 Identities = 21/51 (41%), Positives = 33/51 (64%) Frame = -3 Query: 117 KEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTK 167 ++FA + +F+K+ VNG A PL+K++K +G G+ +AIKWNF K Sbjct: 1725046 QDFAKARGATYPVFAKVEVNGFGAIPLYKFLK-DRQGGGLDISAIKWNFAK 1724897 Score = 37.4 bits (85), Expect = 0.037 Identities = 16/35 (45%), Positives = 21/35 (60%) Frame = -2 Query: 74 GKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQ 108 G T NY +L L+ +YA GL IL FP N+F + Sbjct: 1726661 GLTAQNYAELAALYGKYAGLGLEILGFPSNEFASE 1726557 >emb|FN649731.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence assembly, chromosome LG06 Length = 3939081 Score = 40.4 bits (93), Expect = 0.004 Identities = 21/39 (53%), Positives = 25/39 (64%), Gaps = 1/39 (2%) Frame = -3 Query: 95 LRILAFPCNQFGKQEPGSNEEIKEFA-AGYNVKFDMFSK 132 L I+AFPCNQFG QEPGS +EI A + V F + K Sbjct: 2884222 LAIVAFPCNQFGGQEPGSWQEISSSAERRFGVTFPIMGK 2884106 Score = 36.6 bits (83), Expect = 0.064 Identities = 22/46 (47%), Positives = 28/46 (60%) Frame = -1 Query: 135 VNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRY 180 VNG + PL+ W+K G+ GN I+WNFTKFL+ G V RY Sbjct: 2883477 VNGLRSQPLFAWLKA---ASGVPGN-IEWNFTKFLV-VGGNHVTRY 2883355 >emb|FN649726.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence assembly, chromosome LG01 Length = 3745584 Score = 31.2 bits (69), Expect = 2.7 Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 1/34 (2%) Frame = -2 Query: 4 GRLC-RLLKPALLCGALAAPGLAGTMCASRDDWR 36 GR C L PALL LA PG G + +R DWR Sbjct: 2082899 GRCCGAFLLPALLVLVLARPGDGGALILTRYDWR 2082798 >emb|FN649727.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence assembly, chromosome LG02 Length = 9289656 Score = 30.0 bits (66), Expect = 6.0 Identities = 14/31 (45%), Positives = 17/31 (54%) Frame = -2 Query: 5 RLCRLLKPALLCGALAAPGLAGTMCASRDDW 35 RLC+L+ PA CG L P T CA + W Sbjct: 615182 RLCQLISPAS-CGGLPLPHTNDTRCAPTEAW 615093 >emb|FN649751.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence assembly, chromosome LG26 Length = 7107661 Score = 30.0 bits (66), Expect = 6.0 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 2/36 (5%) Frame = -3 Query: 4 GRLCRLLKPALLCGA--LAAPGLAGTMCASRDDWRC 37 G LCRL PA+LCGA + PG G +C RC Sbjct: 6525839 GTLCRLPAPAVLCGAVGIGRPGPYG-LCLCATGGRC 6525735 >emb|FN649760.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence assembly, unassigned sequences LGUn Length = 58155991 Score = 30.0 bits (66), Expect = 6.0 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 2/36 (5%) Frame = +2 Query: 4 GRLCRLLKPALLCGA--LAAPGLAGTMCASRDDWRC 37 G LCRL PA+LCGA + PG G +C RC Sbjct: 37126715 GTLCRLPAPAVLCGAVGIGRPGPYG-LCLCATGGRC 37126819 Database: E.siliculosus/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 195,934,119 Number of sequences in database: 35 Lambda K H 0.324 0.140 0.456 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,417,742 Number of Sequences: 35 Number of extensions: 984523 Number of successful extensions: 4074 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 7 Number of HSP's that attempted gapping in prelim test: 3790 Number of HSP's gapped (non-prelim): 1049 length of query: 197 length of database: 65,311,373 effective HSP length: 107 effective length of query: 90 effective length of database: 65,307,628 effective search space: 5877686520 effective search space used: 5877686520 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 64 (29.3 bits)