TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000006_1.0 # Protein # Glutathione peroxidase 3 (GPx3) # Homo sapiens # Complete (226 letters) Database: T.trahens/genome.fa 131 sequences; 28,680,627 total letters Searching.................................................................done Score E Sequences producing significant alignments: (bits) Value gb|GL349469.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 137 7e-33 gb|GL349472.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 75 3e-14 gb|GL349489.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 64 6e-11 gb|GL349473.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 59 3e-09 gb|GL349444.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 52 3e-07 gb|GL349442.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 28 3.7 gb|GL349450.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 28 6.2 >gb|GL349469.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.37, whole genome shotgun sequence Length = 357088 Score = 137 bits (344), Expect = 7e-33 Identities = 79/184 (42%), Positives = 104/184 (56%), Gaps = 4/184 (2%) Frame = +2 Query: 37 SGTIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYUGLT-GQYIELNALQEELAPFGLV 95 +G + Y + I G Y F Q GK VL VNVASY GLT Y LN+L + A G Sbjct: 86426 TGDFFSYSSTDIHGNTY-DFSQLKGKVVLAVNVASY*GLTIPNYNALNSLMTKYANRGFT 86602 Query: 96 ILGFPCNQFGKQEPGENSE-ILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKN 154 ++GFPC QF Q+P S+ IL LKYVRPGGGFV NF L K DVNG Y +L Sbjct: 86603 VIGFPCAQFDNQQPEFTSQQILDGLKYVRPGGGFVANFPLMAKSDVNGASRSPVYAYLTG 86782 Query: 155 SCPPTSELLGTSDR-LFWEPMKVHDIRWNFEKFLVGPD-GIPIMRWHHRTTVSNVKMDIL 212 +CP +L S + W P++ DI WNF+K+L+ PD G P+ + T S++ DI Sbjct: 86783 ACPQPMPILEPSTAYISWAPIRPTDITWNFQKYLIHPDTGRPVSVYSPDTLPSDIAADIE 86962 Query: 213 SYMR 216 + ++ Sbjct: 86963 ALLK 86974 >gb|GL349472.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.40, whole genome shotgun sequence Length = 338342 Score = 75.1 bits (183), Expect = 3e-14 Identities = 59/169 (34%), Positives = 80/169 (47%), Gaps = 4/169 (2%) Frame = -2 Query: 39 TIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYUGLT-GQYIELNALQEELAPFGLVIL 97 T+Y++ T+ E + F GK V+ NVAS+ GLT +Y L L GLVI+ Sbjct: 84664 TLYDFSMDTLFHEPF-DFGALRGKVVIVTNVASF*GLTESRYKGLVDLHNRFHEQGLVIV 84488 Query: 98 GFPCNQFGKQEP--GEN-SEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKN 154 G PCNQFG QEP EN +E++ L G +F L K +VNG Y + K+ Sbjct: 84487 GVPCNQFGNQEPFDAENPNELIAFLDDKDWGVSAAVDFLLMTKYEVNGAGAHPLYRWAKS 84308 Query: 155 SCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRTT 203 T LGTS I+WNF F+ G P+ R+ R + Sbjct: 84307 QLKST---LGTS------------IKWNFTHFVFNAKGEPVRRYGRRAS 84206 Score = 50.4 bits (119), Expect = 9e-07 Identities = 34/135 (25%), Positives = 63/135 (46%), Gaps = 2/135 (1%) Frame = -3 Query: 39 TIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYUGLT-GQYIELNALQEELAPFGLVIL 97 ++Y++ T+DG+ Y F GK V+ N+ + L ++++L A+ E + GL++L Sbjct: 82605 SLYQFEMTTLDGDAY-DFSALHGKVVIVTNIGTRSKLAESRFLQLQAIHELYSEQGLIVL 82429 Query: 98 GFP-CNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSC 156 G P +F EP +EI + FQL + VNG + ++K+ Sbjct: 82428 GVPSTGEFDAAEPSSAAEIRSI------ANSYGVTFQLLQAAAVNGSDAHPLFAWIKDK- 82270 Query: 157 PPTSELLGTSDRLFW 171 S ++G + + W Sbjct: 82269 --ASSMVGKAFKAPW 82231 >gb|GL349489.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.57, whole genome shotgun sequence Length = 255174 Score = 64.3 bits (155), Expect = 6e-11 Identities = 51/155 (32%), Positives = 72/155 (46%) Frame = +2 Query: 38 GTIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYUGLTGQYIELNALQEELAPFGLVIL 97 G ++ G+ ++G E + YAG VL VNVAS GLT +Y+ ++ A L I+ Sbjct: 241556 GGLFAAGSFAMNGREVL-LSSYAGSPVLVVNVASECGLT-EYMYTRLVRLARAAPQLRII 241729 Query: 98 GFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCP 157 GFP N+FG QEP +S I + + F L +K +VNG + + +L Sbjct: 241730 GFPSNEFGGQEPRSSSAIRAEM-----AAAYRVTFPLADKIEVNGARAHPVFKWL----- 241879 Query: 158 PTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDG 192 +E G DI WNF FLV DG Sbjct: 241880 -VAESGG------------EDIAWNFTVFLVNGDG 241945 >gb|GL349473.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.41, whole genome shotgun sequence Length = 350512 Score = 58.5 bits (140), Expect = 3e-09 Identities = 39/103 (37%), Positives = 50/103 (48%), Gaps = 6/103 (5%) Frame = +2 Query: 103 QFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEK-----EQKFYTFLKNSCP 157 Q G QE + EIL +YVRPG G+ PNF + K DV G E LK P Sbjct: 32105 QHGLQENARDVEILNMYRYVRPGNGYEPNFPITTKMDVVGPNGGLMAELAAQLPLKPENP 32284 Query: 158 PTSELLGTSD-RLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWH 199 L+ T+ L + + I WNF LVGPDG P+ R++ Sbjct: 32285 NRRYLVDTTPCGLKTKKVSSKTIEWNFGMILVGPDGTPLKRYY 32413 >gb|GL349444.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.12, whole genome shotgun sequence Length = 562821 Score = 52.0 bits (123), Expect = 3e-07 Identities = 39/108 (36%), Positives = 49/108 (45%) Frame = +1 Query: 103 QFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSEL 162 QFG QEPG N EIL + + F LF+K DVNG Y +LK Sbjct: 515614 QFGGQEPGTNEEILEFV------ARYNVQFPLFDKIDVNGSNAAPLYRYLK--------- 515748 Query: 163 LGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRTTVSNVKMD 210 S LF +K WNFE F+V DG + R H TVS + ++ Sbjct: 515749 -AQSSTLFMTRVK-----WNFETFVVDADGHVVSR--HLPTVSPLSLE 515868 Score = 41.2 bits (95), Expect = 5e-04 Identities = 27/65 (41%), Positives = 34/65 (52%), Gaps = 1/65 (1%) Frame = +2 Query: 39 TIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYUGLT-GQYIELNALQEELAPFGLVIL 97 +IY++ I GEE I Y +L NVAS GLT +Y +L L E+L IL Sbjct: 514934 SIYDFTVKDIHGEE-ISLATYKDTVLLITNVASK*GLTDARYTQLVTLHEKLRDRNFNIL 515110 Query: 98 GFPCN 102 FPCN Sbjct: 515111 AFPCN 515125 >gb|GL349442.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.10, whole genome shotgun sequence Length = 578410 Score = 28.5 bits (62), Expect = 3.7 Identities = 10/35 (28%), Positives = 19/35 (54%) Frame = -2 Query: 159 TSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGI 193 T +L DR+ EP++ H++RW ++ P + Sbjct: 342576 TGDLCARGDRVALEPLRRHEVRWGASCAIIMPHSL 342472 >gb|GL349450.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.18, whole genome shotgun sequence Length = 527020 Score = 27.7 bits (60), Expect = 6.2 Identities = 15/35 (42%), Positives = 19/35 (54%) Frame = -3 Query: 101 CNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLF 135 CN K GENS + K ++ GGGF +F LF Sbjct: 221120 CNSLSKI--GENSADASSCKKIKHGGGFAFSFLLF 221022 Database: T.trahens/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 28,680,627 Number of sequences in database: 131 Lambda K H 0.321 0.140 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 8,711,964 Number of Sequences: 131 Number of extensions: 124900 Number of successful extensions: 407 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 378 Number of HSP's gapped (non-prelim): 42 length of query: 226 length of database: 9,560,209 effective HSP length: 96 effective length of query: 130 effective length of database: 9,547,633 effective search space: 1241192290 effective search space used: 1241192290 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 58 (26.9 bits)