TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000006_1.0 # Protein # Glutathione peroxidase 3 (GPx3) # Homo sapiens # Complete (226 letters) Database: S.parasitica/genome.fa 1445 sequences; 53,132,636 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gb|GG743886.1| Saprolegnia parasitica CBS 223.65 genomic scaffol... 104 9e-23 gb|GG743915.1| Saprolegnia parasitica CBS 223.65 genomic scaffol... 89 4e-18 gb|GG744085.1| Saprolegnia parasitica CBS 223.65 genomic scaffol... 56 2e-11 gb|GG743889.1| Saprolegnia parasitica CBS 223.65 genomic scaffol... 29 3.8 gb|GG743883.1| Saprolegnia parasitica CBS 223.65 genomic scaffol... 28 6.5 gb|GG743893.1| Saprolegnia parasitica CBS 223.65 genomic scaffol... 28 8.5 >gb|GG743886.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.4, whole genome shotgun sequence Length = 1210272 Score = 104 bits (259), Expect = 9e-23 Identities = 66/174 (37%), Positives = 89/174 (51%), Gaps = 1/174 (0%) Frame = -2 Query: 39 TIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYUGLTG-QYIELNALQEELAPFGLVIL 97 + ++ G+ +DG+ +P + G+ L VNVAS GLT Y +L L ++L GL IL Sbjct: 1158839 SFFDLGSNNMDGQR-VPMATFRGRVCLVVNVASA*GLTKVNYTQLVQLDDKLRERGLQIL 1158663 Query: 98 GFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCP 157 +PCNQFG QEPG N+EI+ + F F LFEK DVNGE Q+ Y FLK+ P Sbjct: 1158662 AYPCNQFGGQEPGTNAEIMAFV------AKFGVRFPLFEKADVNGEHTQEVYAFLKDRLP 1158501 Query: 158 PTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRTTVSNVKMDI 211 DI WNF KFLV G P+ R+ +++ DI Sbjct: 1158500 -------------------GDITWNFAKFLVDRHGQPVKRYDPNVAPFDLEADI 1158396 Score = 101 bits (252), Expect = 6e-22 Identities = 64/163 (39%), Positives = 84/163 (51%), Gaps = 1/163 (0%) Frame = -2 Query: 54 IPFKQYAGKYVLFVNVASYUGLTG-QYIELNALQEELAPFGLVILGFPCNQFGKQEPGEN 112 +P + Y G+ L VNVAS GLT Y +L L + GL IL +PCNQFG QEPG N Sbjct: 1162352 VPMETYRGRVCLVVNVASA*GLTKLNYTQLVELDNKYRDRGLQILAYPCNQFGGQEPGTN 1162173 Query: 113 SEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWE 172 EI+ + GF F FEK DVNG+ Q Y +LK+ T LG++ Sbjct: 1162172 EEIMAFV------AGFNATFPFFEKADVNGDNTQPVYAYLKSKLTGT---LGSA------ 1162038 Query: 173 PMKVHDIRWNFEKFLVGPDGIPIMRWHHRTTVSNVKMDILSYM 215 I+WNF KFLV +G P R+ +T + + DIL + Sbjct: 1162037 ------IKWNFTKFLVDRNGQPFKRYSPQTAPMDFEADILQLL 1161927 Score = 79.3 bits (194), Expect = 3e-15 Identities = 61/181 (33%), Positives = 81/181 (44%), Gaps = 2/181 (1%) Frame = -3 Query: 37 SGTIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYUGLTGQ--YIELNALQEELAPFGL 94 + + YE + DG E I ++ + L VNVA Q Y +L L GL Sbjct: 1159945 ASSFYELSSKNTDGVE-ISMAKFTSRVCLVVNVAGAS*SQAQLNYTQLVELDRRYRDRGL 1159769 Query: 95 VILGFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKN 154 IL +PCNQF QEPG N EIL + F F + EK DVNG K Q + +LK Sbjct: 1159768 QILLYPCNQFANQEPGTNDEILAFAR------SFGVTFPVMEKADVNGSKTQPVFKYLK- 1159610 Query: 155 SCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRTTVSNVKMDILSY 214 S+L GT I+WN+ KFL+ +G P R+ T + DIL Sbjct: 1159609 -----SKLRGTF---------TSTIKWNYTKFLIDRNGQPYKRFGTFTPPIKLIDDILDL 1159472 Query: 215 M 215 + Sbjct: 1159471 L 1159469 >gb|GG743915.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.33, whole genome shotgun sequence Length = 345601 Score = 89.0 bits (219), Expect = 4e-18 Identities = 65/163 (39%), Positives = 73/163 (44%), Gaps = 1/163 (0%) Frame = +1 Query: 59 YAGKYVLFVNVASYUGL-TGQYIELNALQEELAPFGLVILGFPCNQFGKQEPGENSEILP 117 +AG L VNVAS GL T Y L L P GL IL FPCNQF QEPG EI Sbjct: 140413 FAGSVCLVVNVASQ*GLATLNYTHLAELDRRFRPLGLRILAFPCNQFAGQEPGSEREIRE 140592 Query: 118 TLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVH 177 GF F +F KGDVNG K Q + LK T LG S Sbjct: 140593 F------ANGFGATFPIFAKGDVNGAKTQPVFRSLKAHLTGT---LGAS----------- 140712 Query: 178 DIRWNFEKFLVGPDGIPIMRWHHRTTVSNVKMDILSYMRRQAA 220 I+WNF KFLV +G P R+ T + DIL + A Sbjct: 140713 -IKWNFTKFLVRRNGQPFKRYSPTTPPLRLLDDILMLLAEDKA 140838 >gb|GG744085.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.203, whole genome shotgun sequence Length = 29623 Score = 55.8 bits (133), Expect(2) = 2e-11 Identities = 42/140 (30%), Positives = 64/140 (45%), Gaps = 13/140 (9%) Frame = +1 Query: 93 GLVILGFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEK-------------GD 139 GL ILGFPCNQFG QEPG +IL + + F +F+K D Sbjct: 21910 GLEILGFPCNQFGAQEPGSMRDILALTHH------YDVTFPIFQKVRSMAWAQLGMD*VD 22071 Query: 140 VNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWH 199 VNG + +L TS L G+ +D++WNF KFL+ G P R+ Sbjct: 22072 VNGHDADPVFAYL------TSVLAGSI---------TNDVKWNFSKFLLA-HGQPYARYA 22203 Query: 200 HRTTVSNVKMDILSYMRRQA 219 T+ ++++ I+ + ++ Sbjct: 22204 PTTSPASIEDAIVRILHSRS 22263 Score = 30.8 bits (68), Expect(2) = 2e-11 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 2/51 (3%) Frame = +3 Query: 39 TIYEYGALTIDGEEYIPFKQYAG-KYVLFVNVASYUGLT-GQYIELNALQE 87 + +++ DG + +P +YAG K +L VNVAS GLT Y EL L + Sbjct: 21690 SFFDFVVKGADGAD-VPLSRYAGSKAILVVNVASACGLTDSNYRELQVLHQ 21839 >gb|GG743889.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.7, whole genome shotgun sequence Length = 943373 Score = 29.3 bits (64), Expect = 3.8 Identities = 13/42 (30%), Positives = 22/42 (52%) Frame = -1 Query: 168 RLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRTTVSNVKM 209 +L+W P ++ +W +E L G G+ + WHH S +M Sbjct: 511925 QLWWMPTRIGVGQWRYESRLFGSTGM*M--WHHANGASRHRM 511806 Score = 28.1 bits (61), Expect = 8.5 Identities = 12/31 (38%), Positives = 17/31 (54%) Frame = +1 Query: 3 RLLQASCLLSLLLAGFVSQSRGQEKSKMDCH 33 R + +SC+ LLAG +S R EK + H Sbjct: 46045 RAIASSCVTEHLLAGMISTERRNEKQYLQAH 46137 >gb|GG743883.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.1, whole genome shotgun sequence Length = 1615555 Score = 28.5 bits (62), Expect = 6.5 Identities = 18/81 (22%), Positives = 30/81 (37%) Frame = -3 Query: 101 CNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTS 160 CN+ +Q ++++P L + P + + F L PP Sbjct: 64574 CNRASRQAASVLAQLIPLLALLPPSS-------------TSSDPSAVFLQQLARGTPPAC 64434 Query: 161 ELLGTSDRLFWEPMKVHDIRW 181 EL D L W +VH ++W Sbjct: 64433 ELPAL-DGLVWRSYQVHGVQW 64374 >gb|GG743893.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.11, whole genome shotgun sequence Length = 752600 Score = 28.1 bits (61), Expect = 8.5 Identities = 20/55 (36%), Positives = 23/55 (41%), Gaps = 1/55 (1%) Frame = -1 Query: 152 LKNSCPPTSELLGTSDRLFWEPMKVH-DIRWNFEKFLVGPDGIPIMRWHHRTTVS 205 +K SCP + GTS P V W FE +VG DGI R T S Sbjct: 499019 VKRSCP---RIAGTSIYFVEGPFDVTLKCHWIFEALIVGRDGIRFARSRSSATAS 498864 Database: S.parasitica/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 53,132,636 Number of sequences in database: 1445 Lambda K H 0.321 0.140 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 14,497,811 Number of Sequences: 1445 Number of extensions: 195687 Number of successful extensions: 800 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 57 Number of HSP's successfully gapped in prelim test: 31 Number of HSP's that attempted gapping in prelim test: 635 Number of HSP's gapped (non-prelim): 313 length of query: 226 length of database: 17,710,878 effective HSP length: 100 effective length of query: 126 effective length of database: 17,566,378 effective search space: 2213363628 effective search space used: 2213363628 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 61 (28.1 bits)